Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   A6J55_RS08675 Genome accession   NZ_CP020403
Coordinates   1813137..1813682 (+) Length   181 a.a.
NCBI ID   WP_005755689.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_216     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1808137..1818682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J55_RS08650 (A6J55_08650) - 1808563..1809492 (+) 930 WP_005725108.1 phosphatidate cytidylyltransferase -
  A6J55_RS08655 (A6J55_08655) mog 1809518..1810096 (+) 579 WP_005755686.1 molybdopterin adenylyltransferase -
  A6J55_RS08660 (A6J55_08660) glnB 1810141..1810479 (+) 339 WP_005725112.1 nitrogen regulatory protein P-II -
  A6J55_RS08665 (A6J55_08665) - 1810480..1811733 (+) 1254 WP_005755688.1 AI-2E family transporter -
  A6J55_RS08670 (A6J55_08670) - 1811914..1813098 (+) 1185 WP_005752447.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  A6J55_RS08675 (A6J55_08675) pilF/pilF2 1813137..1813682 (+) 546 WP_005755689.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  A6J55_RS08680 (A6J55_08680) - 1813805..1814761 (+) 957 WP_005755691.1 RodZ domain-containing protein -
  A6J55_RS08685 (A6J55_08685) ispG 1814788..1815891 (+) 1104 WP_005719572.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  A6J55_RS08690 (A6J55_08690) hisS 1815921..1817192 (+) 1272 WP_005755693.1 histidine--tRNA ligase -
  A6J55_RS08695 (A6J55_08695) - 1817211..1817822 (+) 612 WP_005725137.1 YfgM family protein -
  A6J55_RS08700 (A6J55_08700) - 1818034..1818471 (+) 438 WP_005755695.1 isoprenylcysteine carboxylmethyltransferase family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20875.37 Da        Isoelectric Point: 7.8258

>NTDB_id=222257 A6J55_RS08675 WP_005755689.1 1813137..1813682(+) (pilF/pilF2) [Pasteurella multocida strain FDAARGOS_216]
MNRTFRFGIASIFSLFLCACVSQEGNNTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGTFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDAVRYQQ
NLQHLTQFDPNRAKKFPPHIE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=222257 A6J55_RS08675 WP_005755689.1 1813137..1813682(+) (pilF/pilF2) [Pasteurella multocida strain FDAARGOS_216]
ATGAACCGCACTTTTCGATTTGGGATCGCGAGCATTTTTTCTCTTTTTCTTTGTGCTTGTGTGAGTCAAGAAGGTAACAA
TACGTTTGATTCACATGAGGCGGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTACTTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTAGTTTGGTGTGCGTCTTTTGCCAAAGACGCTGTCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

52.096

92.265

0.481
  pilF Glaesserella parasuis strain SC1401

45.405

100

0.464

Multiple sequence alignment