Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C2H94_RS16550 Genome accession   NZ_CP026034
Coordinates   3154432..3156261 (+) Length   609 a.a.
NCBI ID   WP_003245178.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3149432..3161261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS16515 (C2H94_16450) yjbC 3150101..3150679 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C2H94_RS16520 (C2H94_16455) spx 3150860..3151255 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  C2H94_RS16525 (C2H94_16460) yjbE 3151301..3151957 (-) 657 WP_038828809.1 TerC family protein -
  C2H94_RS16530 - 3152127..3152267 (+) 141 WP_119122854.1 hypothetical protein -
  C2H94_RS16535 (C2H94_16465) mecA 3152234..3152890 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  C2H94_RS16540 - 3152885..3153007 (-) 123 WP_124059721.1 hypothetical protein -
  C2H94_RS16545 (C2H94_16470) coiA 3153081..3154202 (+) 1122 WP_237984014.1 competence protein CoiA Machinery gene
  C2H94_RS16550 (C2H94_16475) pepF 3154432..3156261 (+) 1830 WP_003245178.1 oligoendopeptidase F Regulator
  C2H94_RS16555 (C2H94_16480) - 3156299..3156466 (-) 168 WP_003244944.1 hypothetical protein -
  C2H94_RS16560 (C2H94_16490) spxH 3156780..3157679 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  C2H94_RS16565 (C2H94_16495) yjbI 3157676..3158074 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  C2H94_RS16570 (C2H94_16500) cwlQ 3158329..3159063 (-) 735 WP_249848280.1 bifunctional muramidase/murein lytic transglycosylase -
  C2H94_RS16575 (C2H94_16505) yjbK 3159078..3159650 (-) 573 WP_103803610.1 CYTH domain-containing protein -
  C2H94_RS16580 (C2H94_16510) - 3159775..3160143 (+) 369 WP_003232922.1 hypothetical protein -
  C2H94_RS16585 (C2H94_16515) yjbM 3160172..3160807 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70085.95 Da        Isoelectric Point: 5.1562

>NTDB_id=222257 C2H94_RS16550 WP_003245178.1 3154432..3156261(+) (pepF) [Bacillus subtilis strain PK5_52]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=222257 C2H94_RS16550 WP_003245178.1 3154432..3156261(+) (pepF) [Bacillus subtilis strain PK5_52]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTAGGTAGGCTGTAC
ACATATGCGCATATGCGCTCAGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCTGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAGTTGAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCGCTGCTTGCTGAAGCTTCCGAGGTACTTGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
TACGTTCCCGTCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGTAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTTAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCAGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTCTACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATCG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATATGGCAATTACAGTATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476

Multiple sequence alignment