Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C2H94_RS15410 Genome accession   NZ_CP026034
Coordinates   2932972..2933619 (+) Length   215 a.a.
NCBI ID   WP_021479675.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2927972..2938619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS15395 (C2H94_15335) glpD 2928143..2929810 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  C2H94_RS15400 (C2H94_15340) pgcA 2929942..2931687 (+) 1746 WP_049140652.1 phosphoglucomutase -
  C2H94_RS15405 (C2H94_15345) yhcY 2931836..2932975 (+) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  C2H94_RS15410 (C2H94_15350) vraR 2932972..2933619 (+) 648 WP_021479675.1 two-component system response regulator YhcZ Regulator
  C2H94_RS15415 (C2H94_15355) yhdA 2933616..2934139 (+) 524 Protein_2965 FMN-dependent NADPH-azoreductase -
  C2H94_RS15420 (C2H94_15360) yhdB 2934154..2934396 (-) 243 WP_003233373.1 YhdB family protein -
  C2H94_RS15425 (C2H94_15365) yhdC 2934597..2934920 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  C2H94_RS15430 (C2H94_15370) lytF 2934962..2936428 (-) 1467 WP_041851034.1 peptidoglycan endopeptidase LytF -
  C2H94_RS15435 (C2H94_15375) nsrR 2936583..2937023 (-) 441 WP_014476271.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24163.80 Da        Isoelectric Point: 6.3039

>NTDB_id=222237 C2H94_RS15410 WP_021479675.1 2932972..2933619(+) (vraR) [Bacillus subtilis strain PK5_52]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=222237 C2H94_RS15410 WP_021479675.1 2932972..2933619(+) (vraR) [Bacillus subtilis strain PK5_52]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4

Multiple sequence alignment