Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J54_RS14570 Genome accession   NZ_CP020402
Coordinates   631624..632088 (+) Length   154 a.a.
NCBI ID   WP_172595944.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 626624..637088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS14570 comE 631624..632088 (+) 465 WP_172595944.1 ComEA family DNA-binding protein Machinery gene
  A6J54_RS03870 (A6J54_03735) comP 632176..632625 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  A6J54_RS15400 (A6J54_03740) - 632715..633058 (-) 344 Protein_623 5'-nucleotidase -
  A6J54_RS03880 (A6J54_03745) - 633170..633382 (-) 213 WP_002224145.1 SWIM zinc finger domain-containing protein -
  A6J54_RS03890 (A6J54_03755) - 633614..634087 (+) 474 Protein_625 IS5/IS1182 family transposase -
  A6J54_RS03905 (A6J54_03760) - 634493..635548 (+) 1056 WP_024496867.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16592.89 Da        Isoelectric Point: 10.8773

>NTDB_id=222237 A6J54_RS14570 WP_172595944.1 631624..632088(+) (comE) [Neisseria meningitidis strain FDAARGOS_215]
MLYPEKMSGMAGRHLYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=222237 A6J54_RS14570 WP_172595944.1 631624..632088(+) (comE) [Neisseria meningitidis strain FDAARGOS_215]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCTGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCACTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment