Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   A6J54_RS00280 Genome accession   NZ_CP020402
Coordinates   50921..51565 (-) Length   214 a.a.
NCBI ID   WP_002212479.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45921..56565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS00245 (A6J54_00220) ftsL 46300..46563 (-) 264 WP_002232818.1 cell division protein FtsL -
  A6J54_RS00250 (A6J54_00225) rsmH 46560..47546 (-) 987 WP_080541821.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  A6J54_RS00255 (A6J54_00230) mraZ 47543..47998 (-) 456 WP_002212482.1 division/cell wall cluster transcriptional repressor MraZ -
  A6J54_RS00260 (A6J54_00235) - 48304..49494 (+) 1191 WP_164733837.1 class I SAM-dependent methyltransferase -
  A6J54_RS00275 (A6J54_00255) - 50067..50888 (-) 822 WP_080541823.1 undecaprenyl-diphosphate phosphatase -
  A6J54_RS00280 (A6J54_00260) dsbA1 50921..51565 (-) 645 WP_002212479.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  A6J54_RS00285 (A6J54_00265) ftsN 51568..52413 (-) 846 WP_172595938.1 cell division protein FtsN -
  A6J54_RS00290 (A6J54_00270) comM 52519..54015 (-) 1497 WP_080541825.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A6J54_RS00295 (A6J54_00275) - 54029..54349 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  A6J54_RS00305 (A6J54_00285) putP 54832..56358 (+) 1527 WP_002220352.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23983.98 Da        Isoelectric Point: 9.8294

>NTDB_id=222192 A6J54_RS00280 WP_002212479.1 50921..51565(-) (dsbA1) [Neisseria meningitidis strain FDAARGOS_215]
MKLKHLLPLLLSAVLSAQAYALTEREDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=222192 A6J54_RS00280 WP_002212479.1 50921..51565(-) (dsbA1) [Neisseria meningitidis strain FDAARGOS_215]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAAGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGCAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAATTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTCTGGCCAGGATGGCGGCCGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGTCGGTTGCCGGAAAGTGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCTCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

56.684

87.383

0.495
  dsbA2 Neisseria meningitidis MC58

51.075

86.916

0.444

Multiple sequence alignment