Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J53_RS15160 Genome accession   NZ_CP020401
Coordinates   351850..352314 (-) Length   154 a.a.
NCBI ID   WP_181811226.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346850..357314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS02115 (A6J53_02070) - 347163..347591 (+) 429 WP_079886573.1 CopD family protein -
  A6J53_RS02120 (A6J53_02075) - 347603..348079 (+) 477 WP_002241062.1 CYTH domain-containing protein -
  A6J53_RS02125 (A6J53_02085) - 348429..348917 (-) 489 WP_002256361.1 dihydrofolate reductase -
  A6J53_RS02130 (A6J53_02090) aroG 348985..350040 (-) 1056 WP_002216371.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  A6J53_RS02140 (A6J53_02100) - 350707..350964 (+) 258 WP_002231679.1 membrane protein -
  A6J53_RS02145 (A6J53_13980) - 351013..351117 (-) 105 Protein_323 IS1595 family transposase -
  A6J53_RS15550 - 351221..351679 (-) 459 WP_002239519.1 hypothetical protein -
  A6J53_RS15160 comE 351850..352314 (-) 465 WP_181811226.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16500.85 Da        Isoelectric Point: 10.9585

>NTDB_id=222189 A6J53_RS15160 WP_181811226.1 351850..352314(-) (comE) [Neisseria meningitidis strain FDAARGOS_214]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=222189 A6J53_RS15160 WP_181811226.1 351850..352314(-) (comE) [Neisseria meningitidis strain FDAARGOS_214]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment