Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   A6J53_RS09120 Genome accession   NZ_CP020401
Coordinates   1536399..1540013 (-) Length   1204 a.a.
NCBI ID   WP_002256520.1    Uniprot ID   A0A378VSM7
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1531399..1545013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS09095 (A6J53_08885) hemE 1532490..1533554 (+) 1065 WP_002234773.1 uroporphyrinogen decarboxylase -
  A6J53_RS15365 - 1533542..1533715 (-) 174 WP_153317766.1 hypothetical protein -
  A6J53_RS09100 (A6J53_08890) radA 1533743..1535122 (+) 1380 WP_002256517.1 DNA repair protein RadA Machinery gene
  A6J53_RS09110 (A6J53_08900) - 1535397..1535876 (-) 480 WP_002256519.1 DUF302 domain-containing protein -
  A6J53_RS09115 (A6J53_08905) - 1536001..1536360 (-) 360 WP_002213989.1 rhodanese-like domain-containing protein -
  A6J53_RS09120 (A6J53_08910) recB 1536399..1540013 (-) 3615 WP_002256520.1 exodeoxyribonuclease V subunit beta Machinery gene
  A6J53_RS09125 (A6J53_08915) - 1540243..1541151 (-) 909 WP_002237829.1 Dyp-type peroxidase -
  A6J53_RS09135 (A6J53_08925) - 1541436..1542263 (+) 828 WP_002213986.1 amino acid ABC transporter substrate-binding protein -
  A6J53_RS09140 (A6J53_08930) - 1542253..1542969 (+) 717 WP_002213985.1 amino acid ABC transporter permease -
  A6J53_RS09145 (A6J53_08935) - 1542979..1543734 (+) 756 WP_002256521.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134711.25 Da        Isoelectric Point: 5.9257

>NTDB_id=222175 A6J53_RS09120 WP_002256520.1 1536399..1540013(-) (recB) [Neisseria meningitidis strain FDAARGOS_214]
MSAPIQAFDPLTVPIAGTNLIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLIPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLKQAQRNAETS
WQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHERLLKLASDKLEARLKKGKTPDAA
VFAELQKLADFGYDLNALEEAEEATIIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYNA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTADNPLAYLIEGLPQDSRETVRQTYDREKDGIAMLKRNW
RRLTDNAPAGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEIWLPAVAEMAEACQKTPLT
GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICVI
DYKSNHLGADASAYTQQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGTDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=222175 A6J53_RS09120 WP_002256520.1 1536399..1540013(-) (recB) [Neisseria meningitidis strain FDAARGOS_214]
ATGTCCGCACCCATCCAAGCATTCGACCCGCTAACCGTCCCCATTGCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGAAAAACCTACGGCATCGCCGCCCTGTTTACGCGCCTGATCGTATTGGAACAAAAAAACGTCGAGCGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACCGCCGAGTTGAAAACACGCCTGCGCGCACGTTTGGACGATGTGTTGCAGGTTTTAGAA
AGTAAAGAAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCATCGCCGCCTATTGTGCGGAACACCACAAAGGCGA
CACCTTCCTGCCCGCACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTATACCATCCACGGCTTCTGCCAACGTATCCTGCGCGACTACGCCTTCTTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTATCCCAGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCAACGCCGAAACCTCA
TGGCAAACCGTCTGCCGCCTGCTGCCCGAGCTGGAAGCCGGCTTTTGGCGCATCCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACGCACGAACGGCTCTTGAAACTTGCGTCCGACAAACTCGAAGCCAGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGTACGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATAAT
CCGGCTGCAACTGGATTTAATCGGATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGCCCGCTGTTTCTGGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGAGCGGACATTTACGCCTACCTTC
AGGCAGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCACTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGATTGTCGCCCAAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGACGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGCTATAACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATCAATACGGCATTTTCGCCGCTATGCAGCAATTTTCCCAAACACACGGCATCGAAACACGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCG
CTGCACAAATGGCTGCGCGACCAAATCAGCCTGGCCGGCAACAACGGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCCGAAGACGAACAGAAACAATACGCCGATGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCATACTCCACCAATACTGCCGACAACCCCCTCGCCTACCTGATTGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCAAACCTATGACCGGGAAAAAGACGGCATCGCGATGCTCAAACGCAACTGG
CGGCGTTTGACGGACAATGCCCCGGCCGGCACGGATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCAGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCCTTAAGCCGCCATACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGATTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACTCTCATTGCCGACAAGC
TGAAAAAATACGGATTTGAAGAAATATGGCTGCCTGCCGTTGCCGAAATGGCGGAAGCCTGCCAGAAAACGCCGCTGACG
GGGGCATACTGCCTGTCCGACATCCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGATATCCGATTGCCCGAAGTCTGCCGTGCCGCCGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCGTCATC
GACTACAAATCAAACCATCTCGGCGCGGACGCATCCGCCTACACGCAACAGGCGATGGACGAAGCCGTCGCGCACCACCA
CTATTACCTTCAGGCGCTGATTTACGCCGTTGCCGCCGCACGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGCACAGACGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1068-1182)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378VSM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

94.85

100

0.949

Multiple sequence alignment