Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6J53_RS09100 Genome accession   NZ_CP020401
Coordinates   1533743..1535122 (+) Length   459 a.a.
NCBI ID   WP_002256517.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1528743..1540122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS09080 (A6J53_08870) - 1529091..1529852 (+) 762 WP_002232081.1 uroporphyrinogen-III synthase -
  A6J53_RS09085 (A6J53_08875) - 1529867..1531201 (+) 1335 WP_002244495.1 uroporphyrinogen-III C-methyltransferase -
  A6J53_RS09090 (A6J53_08880) - 1531198..1532415 (+) 1218 WP_002256516.1 heme biosynthesis protein HemY -
  A6J53_RS09095 (A6J53_08885) hemE 1532490..1533554 (+) 1065 WP_002234773.1 uroporphyrinogen decarboxylase -
  A6J53_RS15365 - 1533542..1533715 (-) 174 WP_153317766.1 hypothetical protein -
  A6J53_RS09100 (A6J53_08890) radA 1533743..1535122 (+) 1380 WP_002256517.1 DNA repair protein RadA Machinery gene
  A6J53_RS09110 (A6J53_08900) - 1535397..1535876 (-) 480 WP_002256519.1 DUF302 domain-containing protein -
  A6J53_RS09115 (A6J53_08905) - 1536001..1536360 (-) 360 WP_002213989.1 rhodanese-like domain-containing protein -
  A6J53_RS09120 (A6J53_08910) recB 1536399..1540013 (-) 3615 WP_002256520.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49558.04 Da        Isoelectric Point: 7.1109

>NTDB_id=222174 A6J53_RS09100 WP_002256517.1 1533743..1535122(+) (radA) [Neisseria meningitidis strain FDAARGOS_214]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTHMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=222174 A6J53_RS09100 WP_002256517.1 1533743..1535122(+) (radA) [Neisseria meningitidis strain FDAARGOS_214]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACCTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCGCCCGAGCCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCTGCCCAACAGGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCCACAGAAGGTGTGAACCTGCTTGCCGAAATCCGCATGGAGGCGATTCAGACGGCC
TTGAAACAGCATCAGCCCGAGGTCGTCGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCAGG
CTCAGTGTCGCAGGTACGTGAATGCGCCGCCCAACTGACGCATATGGCGAAACAAATGGGCATCGCCATGATATTGGTCG
GACACGTGACCAAAGACGGCGCAATTGCCGGCCCGCGCGTATTGGAGCATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCAGCAAACGAATTGGGCGTGTTTGCCAT
GACCGAAAACGGCTTGAAAGGCGTATCCAATCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGATACGCCCGGCTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACG
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGTCTTGCGATGCTGCTTGCCGTGTTAAACCGCCACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTCCTCAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGGCAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGTGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464

Multiple sequence alignment