Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   C2H94_RS04345 Genome accession   NZ_CP026034
Coordinates   775433..776143 (-) Length   236 a.a.
NCBI ID   WP_072175298.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 770433..781143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS04325 (C2H94_04290) cysK 770487..771422 (+) 936 WP_003229237.1 cysteine synthase A -
  C2H94_RS04330 (C2H94_04295) pepV 771456..772845 (-) 1390 Protein_861 dipeptidase PepV -
  C2H94_RS04335 (C2H94_04300) pbuO 772942..774240 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  C2H94_RS04340 (C2H94_04305) ythQ 774279..775436 (-) 1158 WP_070547642.1 ABC transporter permease -
  C2H94_RS04345 (C2H94_04310) pptA 775433..776143 (-) 711 WP_072175298.1 ABC transporter ATP-binding protein Regulator
  C2H94_RS04350 (C2H94_04315) ytzE 776433..776654 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  C2H94_RS04355 (C2H94_04320) rsuA 776776..777495 (-) 720 WP_014480587.1 pseudouridine synthase -
  C2H94_RS04360 (C2H94_04325) murJ 777564..779198 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  C2H94_RS04365 (C2H94_04330) ytfP 779402..780664 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26589.70 Da        Isoelectric Point: 5.5930

>NTDB_id=222174 C2H94_RS04345 WP_072175298.1 775433..776143(-) (pptA) [Bacillus subtilis strain PK5_52]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=222174 C2H94_RS04345 WP_072175298.1 775433..776143(-) (pptA) [Bacillus subtilis strain PK5_52]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432

Multiple sequence alignment