Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A6J53_RS08640 Genome accession   NZ_CP020401
Coordinates   1461673..1462476 (-) Length   267 a.a.
NCBI ID   WP_033911979.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1456673..1467476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS08625 (A6J53_08415) - 1457894..1458901 (-) 1008 WP_082301662.1 IS5 family transposase -
  A6J53_RS16200 - 1459123..1459314 (-) 192 Protein_1389 hypothetical protein -
  A6J53_RS08635 (A6J53_08425) comA 1459396..1461615 (+) 2220 WP_153559768.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A6J53_RS08640 (A6J53_08430) comL 1461673..1462476 (-) 804 WP_033911979.1 outer membrane protein assembly factor BamD Machinery gene
  A6J53_RS08645 (A6J53_08435) rluD 1462475..1463599 (+) 1125 WP_002223935.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A6J53_RS08650 (A6J53_08440) - 1463751..1464698 (-) 948 WP_002233697.1 bile acid:sodium symporter family protein -
  A6J53_RS08655 (A6J53_08445) - 1464776..1464967 (-) 192 WP_002256492.1 hypothetical protein -
  A6J53_RS16205 - 1464918..1465091 (-) 174 Protein_1395 IS5/IS1182 family transposase -
  A6J53_RS08660 (A6J53_08450) pgeF 1465258..1466037 (+) 780 WP_002256493.1 peptidoglycan editing factor PgeF -
  A6J53_RS08665 (A6J53_08455) lptE 1466089..1466568 (+) 480 WP_002214127.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30822.86 Da        Isoelectric Point: 8.9351

>NTDB_id=222172 A6J53_RS08640 WP_033911979.1 1461673..1462476(-) (comL) [Neisseria meningitidis strain FDAARGOS_214]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMIKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=222172 A6J53_RS08640 WP_033911979.1 1461673..1462476(-) (comL) [Neisseria meningitidis strain FDAARGOS_214]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTACTGTTCAACGAAGATCAGTCTTTCTTGAACAAGCTGGCCTCGCAAG
ACTGGTCCGACCGCGATCCGAAAGCCAACCGCGAAGCGTATCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGATCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATACATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGTTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.127

100

0.981
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment