Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J53_RS03630 Genome accession   NZ_CP020401
Coordinates   564333..564797 (+) Length   154 a.a.
NCBI ID   WP_025463842.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 559333..569797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS03630 (A6J53_03535) comE 564333..564797 (+) 465 WP_025463842.1 ComEA family DNA-binding protein Machinery gene
  A6J53_RS15180 - 564826..564984 (+) 159 WP_002215272.1 hypothetical protein -
  A6J53_RS03635 (A6J53_03540) dnaJ 565066..566187 (+) 1122 WP_002215274.1 molecular chaperone DnaJ -
  A6J53_RS03640 (A6J53_03545) - 566383..568401 (+) 2019 WP_002256266.1 OPT family oligopeptide transporter -
  A6J53_RS03645 (A6J53_03550) rfbC 568445..569002 (-) 558 WP_082301603.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16545.80 Da        Isoelectric Point: 10.8645

>NTDB_id=222157 A6J53_RS03630 WP_025463842.1 564333..564797(+) (comE) [Neisseria meningitidis strain FDAARGOS_214]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=222157 A6J53_RS03630 WP_025463842.1 564333..564797(+) (comE) [Neisseria meningitidis strain FDAARGOS_214]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment