Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C2H91_RS14380 Genome accession   NZ_CP026030
Coordinates   2906802..2907437 (+) Length   211 a.a.
NCBI ID   WP_021480575.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901802..2912437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS14355 (C2H91_14385) liaI 2902929..2903309 (+) 381 WP_003228504.1 cell envelope stress-induced membrane anchor protein LiaI -
  C2H91_RS14360 (C2H91_14390) liaH 2903336..2904013 (+) 678 WP_015714684.1 PspA/IM30 family protein -
  C2H91_RS14365 (C2H91_14395) liaG 2904114..2904986 (+) 873 WP_249850853.1 DUF4097 domain-containing protein -
  C2H91_RS14370 (C2H91_14400) liaF 2905020..2905745 (+) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  C2H91_RS14375 (C2H91_14405) liaS 2905742..2906824 (+) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  C2H91_RS14380 (C2H91_14410) vraR 2906802..2907437 (+) 636 WP_021480575.1 two-component system response regulator LiaR Regulator
  C2H91_RS14385 (C2H91_14415) gerAC 2907445..2908566 (-) 1122 WP_021480574.1 spore germination receptor protein GerAC -
  C2H91_RS14390 (C2H91_14420) gerAB 2908563..2909660 (-) 1098 WP_021480573.1 spore germination receptor protein GerAB -
  C2H91_RS14395 (C2H91_14425) gerAA 2909629..2911077 (-) 1449 WP_021480572.1 spore germination receptor protein GerAA -
  C2H91_RS14400 (C2H91_14430) yvzF 2911195..2911380 (+) 186 WP_003244599.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23110.77 Da        Isoelectric Point: 5.0313

>NTDB_id=222089 C2H91_RS14380 WP_021480575.1 2906802..2907437(+) (vraR) [Bacillus subtilis strain PK3_9]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=222089 C2H91_RS14380 WP_021480575.1 2906802..2907437(+) (vraR) [Bacillus subtilis strain PK3_9]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCGGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTGACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCGCATCGAAATCATCTCGTCAAATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.408