Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C2H91_RS05145 Genome accession   NZ_CP026030
Coordinates   1081372..1082019 (-) Length   215 a.a.
NCBI ID   WP_249851165.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076372..1087019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS05120 (C2H91_05100) nsrR 1077969..1078409 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  C2H91_RS05125 (C2H91_05105) lytF 1078562..1080028 (+) 1467 WP_015252477.1 peptidoglycan endopeptidase LytF -
  C2H91_RS05130 (C2H91_05110) yhdC 1080070..1080393 (-) 324 WP_249851164.1 YqzG/YhdC family protein -
  C2H91_RS05135 (C2H91_05115) yhdB 1080594..1080836 (+) 243 WP_003233373.1 YhdB family protein -
  C2H91_RS05140 (C2H91_05120) yhdA 1080851..1081375 (-) 525 WP_017695404.1 FMN-dependent NADPH-azoreductase -
  C2H91_RS05145 (C2H91_05125) vraR 1081372..1082019 (-) 648 WP_249851165.1 two-component system response regulator YhcZ Regulator
  C2H91_RS05150 (C2H91_05130) yhcY 1082016..1083155 (-) 1140 WP_021479676.1 two-component system sensor histidine kinase YhcY -
  C2H91_RS05155 (C2H91_05135) pgcA 1083304..1085049 (-) 1746 WP_133953592.1 phosphoglucomutase -
  C2H91_RS05160 (C2H91_05140) glpD 1085181..1086848 (-) 1668 WP_249851166.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24204.90 Da        Isoelectric Point: 6.5025

>NTDB_id=222033 C2H91_RS05145 WP_249851165.1 1081372..1082019(-) (vraR) [Bacillus subtilis strain PK3_9]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGQYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAASLFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEILK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=222033 C2H91_RS05145 WP_249851165.1 1081372..1082019(-) (vraR) [Bacillus subtilis strain PK3_9]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCCAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCATCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
TAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.019

97.209

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.405