Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   C2H91_RS02080 Genome accession   NZ_CP026030
Coordinates   491489..492514 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain PK3_9     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 486489..497514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS02045 (C2H91_02035) - 486974..487870 (-) 897 WP_172849758.1 2-dehydropantoate 2-reductase -
  C2H91_RS02050 (C2H91_02040) ylbP 488030..488512 (+) 483 WP_014476736.1 N-acetyltransferase -
  C2H91_RS02055 (C2H91_02045) gerR 488569..489150 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  C2H91_RS02060 (C2H91_02050) rpmF 489296..489475 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  C2H91_RS02065 (C2H91_02055) ylbN 489497..490015 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  C2H91_RS02070 (C2H91_02060) - 490043..490228 (+) 186 WP_003232215.1 hypothetical protein -
  C2H91_RS02075 (C2H91_02065) ylbM 490225..491472 (+) 1248 WP_041850860.1 nucleotidyltransferase -
  C2H91_RS02080 (C2H91_02070) sepM 491489..492514 (-) 1026 WP_003245451.1 protease DdcP Regulator
  C2H91_RS02085 (C2H91_02075) ylbK 492516..493298 (-) 783 WP_072174075.1 patatin family protein -
  C2H91_RS02090 (C2H91_02080) spoVV 493479..494705 (+) 1227 WP_064671350.1 dipicolinic acid transporter SpoVV -
  C2H91_RS02095 (C2H91_02085) coaD 494716..495201 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C2H91_RS02100 (C2H91_02090) rsmD 495206..495760 (-) 555 WP_072174076.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2H91_RS02105 (C2H91_02095) ylbG 496083..496355 (-) 273 WP_009967171.1 YlbG family protein -
  C2H91_RS02110 (C2H91_02100) ylbF 496410..496859 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C2H91_RS02115 (C2H91_02105) ylbE 496975..497214 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=222002 C2H91_RS02080 WP_003245451.1 491489..492514(-) (sepM) [Bacillus subtilis strain PK3_9]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=222002 C2H91_RS02080 WP_003245451.1 491489..492514(-) (sepM) [Bacillus subtilis strain PK3_9]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCGAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402