Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C2H91_RS02110 Genome accession   NZ_CP026030
Coordinates   496410..496859 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PK3_9     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 491410..501859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS02080 (C2H91_02070) sepM 491489..492514 (-) 1026 WP_003245451.1 protease DdcP Regulator
  C2H91_RS02085 (C2H91_02075) ylbK 492516..493298 (-) 783 WP_072174075.1 patatin family protein -
  C2H91_RS02090 (C2H91_02080) spoVV 493479..494705 (+) 1227 WP_064671350.1 dipicolinic acid transporter SpoVV -
  C2H91_RS02095 (C2H91_02085) coaD 494716..495201 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C2H91_RS02100 (C2H91_02090) rsmD 495206..495760 (-) 555 WP_072174076.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2H91_RS02105 (C2H91_02095) ylbG 496083..496355 (-) 273 WP_009967171.1 YlbG family protein -
  C2H91_RS02110 (C2H91_02100) ylbF 496410..496859 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C2H91_RS02115 (C2H91_02105) ylbE 496975..497214 (-) 240 WP_003232231.1 YlbE-like family protein -
  C2H91_RS02120 (C2H91_02110) ylbD 497230..497628 (-) 399 WP_003232233.1 YlbD family protein -
  C2H91_RS02125 (C2H91_02115) ylbC 497859..498899 (-) 1041 WP_032725641.1 CAP domain-containing protein -
  C2H91_RS02130 (C2H91_02120) ylbB 498983..499429 (-) 447 WP_003221362.1 CBS domain-containing protein -
  C2H91_RS02135 (C2H91_02125) ylbA 499569..499931 (+) 363 WP_003232238.1 YugN family protein -
  C2H91_RS02140 (C2H91_02130) ctaG 499963..500856 (-) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  C2H91_RS02145 (C2H91_02135) ctaF 500884..501216 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C2H91_RS02150 (C2H91_02140) ctaE 501219..501842 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=222003 C2H91_RS02110 WP_003221370.1 496410..496859(-) (ylbF) [Bacillus subtilis strain PK3_9]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=222003 C2H91_RS02110 WP_003221370.1 496410..496859(-) (ylbF) [Bacillus subtilis strain PK3_9]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1