Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C2H82_RS14225 Genome accession   NZ_CP026027
Coordinates   2730360..2731097 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain LIM     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725360..2736097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H82_RS14210 clpC 2725814..2728387 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C2H82_RS14215 yfiH 2728517..2729248 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  C2H82_RS14220 rluD 2729245..2730225 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C2H82_RS14225 comL 2730360..2731097 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C2H82_RS14235 raiA 2731368..2731709 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C2H82_RS14240 pheL 2731813..2731860 (+) 48 WP_010723158.1 phe operon leader peptide -
  C2H82_RS14245 pheA 2731959..2733119 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  C2H82_RS14250 tyrA 2733162..2734283 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C2H82_RS14255 aroF 2734294..2735364 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C2H82_RS14260 yfiL 2735574..2735939 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=221859 C2H82_RS14225 WP_000197686.1 2730360..2731097(+) (comL) [Escherichia coli strain LIM]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=221859 C2H82_RS14225 WP_000197686.1 2730360..2731097(+) (comL) [Escherichia coli strain LIM]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376