Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BLMD_RS18940 Genome accession   NZ_CP020352
Coordinates   3746694..3748088 (-) Length   464 a.a.
NCBI ID   WP_020453117.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3741694..3753088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS18905 (BLMD_18905) flgL 3741881..3742792 (-) 912 WP_020453110.1 flagellar hook-associated protein FlgL -
  BLMD_RS18910 (BLMD_18910) flgK 3742803..3744326 (-) 1524 WP_020453111.1 flagellar hook-associated protein FlgK -
  BLMD_RS18915 (BLMD_18915) - 3744342..3744818 (-) 477 WP_023856391.1 flagellar protein FlgN -
  BLMD_RS18920 (BLMD_18920) flgM 3744837..3745103 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  BLMD_RS18925 (BLMD_18925) - 3745183..3745602 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  BLMD_RS18930 (BLMD_18930) comFC 3745661..3746398 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  BLMD_RS18935 (BLMD_18935) - 3746355..3746639 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  BLMD_RS18940 (BLMD_18940) comFA 3746694..3748088 (-) 1395 WP_020453117.1 DEAD/DEAH box helicase Machinery gene
  BLMD_RS18945 (BLMD_18945) - 3748212..3749054 (-) 843 WP_020453118.1 DegV family protein -
  BLMD_RS18950 (BLMD_18950) degU 3749174..3749863 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  BLMD_RS18955 (BLMD_18955) degS 3749945..3751102 (-) 1158 WP_020453119.1 sensor histidine kinase Regulator
  BLMD_RS18960 (BLMD_18960) - 3751325..3751963 (+) 639 WP_023856394.1 YigZ family protein -
  BLMD_RS18965 (BLMD_18965) - 3751978..3753057 (+) 1080 WP_020453121.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53050.78 Da        Isoelectric Point: 9.7663

>NTDB_id=221663 BLMD_RS18940 WP_020453117.1 3746694..3748088(-) (comFA) [Bacillus paralicheniformis strain MDJK30]
MIHIEHPASYSCELRSCLEQRHLLKSELSFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACVMMGRVSECTSLLTWRGHGRHEWAPVYTEWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGMEIAALYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLHTVRIPARFHRSPLPEPTLIWCGNWERGLKRRKVPLRLK
KWLFKHQELQHPVFLFVPSIPVLKTVVSLLKKETFRAEGVYAEDPERNEKVNRFRKSKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKSMNAARRHIQYMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=221663 BLMD_RS18940 WP_020453117.1 3746694..3748088(-) (comFA) [Bacillus paralicheniformis strain MDJK30]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTTCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTGTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGATGGAAATCGCCGCTTTATACGGAGGAAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTCCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTTACGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTCTGTTTGTTCCCTCTATCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCAGAAGGAGTCTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGAAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGTGTAACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGTCGGCTGTTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGCAGAGCCGGCAGGCATCCTGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGTAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAATATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(318-424)

Type III restriction enzyme, res subunit (ResIII)

(122-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.424

98.707

0.567

Multiple sequence alignment