Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   BLMD_RS17065 Genome accession   NZ_CP020352
Coordinates   3380249..3380389 (-) Length   46 a.a.
NCBI ID   WP_003184860.1    Uniprot ID   P69890
Organism   Bacillus paralicheniformis strain MDJK30     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3375249..3385389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS17040 (BLMD_17040) - 3375550..3375939 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  BLMD_RS17045 (BLMD_17045) comA 3375956..3376594 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  BLMD_RS17050 (BLMD_17050) - 3376681..3378992 (-) 2312 Protein_3312 ATP-binding protein -
  BLMD_RS17055 (BLMD_17055) comX 3379004..3379177 (-) 174 WP_080131484.1 competence pheromone ComX -
  BLMD_RS17060 (BLMD_17060) - 3379181..3380062 (-) 882 WP_080131485.1 polyprenyl synthetase family protein -
  BLMD_RS17065 (BLMD_17065) degQ 3380249..3380389 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  BLMD_RS17075 (BLMD_17075) - 3381001..3381222 (+) 222 WP_229029875.1 hypothetical protein -
  BLMD_RS17080 (BLMD_17080) - 3381265..3382485 (-) 1221 WP_020452793.1 EAL and HDOD domain-containing protein -
  BLMD_RS17085 (BLMD_17085) - 3382663..3384132 (-) 1470 WP_023856157.1 nicotinate phosphoribosyltransferase -
  BLMD_RS17090 (BLMD_17090) - 3384150..3384701 (-) 552 WP_026580053.1 cysteine hydrolase family protein -
  BLMD_RS17095 (BLMD_17095) - 3384887..3385288 (-) 402 WP_026580054.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5747.56 Da        Isoelectric Point: 8.4596

>NTDB_id=221657 BLMD_RS17065 WP_003184860.1 3380249..3380389(-) (degQ) [Bacillus paralicheniformis strain MDJK30]
MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTYLKTS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=221657 BLMD_RS17065 WP_003184860.1 3380249..3380389(-) (degQ) [Bacillus paralicheniformis strain MDJK30]
GTGGAAAAGCAACAAATTGAAGAATTAAAACAACTGCTTTGGCGGCTAGAGAATGAAATCAGAGAAACAAAGGACTCCTT
GCGCAAGATTAACAAAAGCATTGATCAATACGATAAGTACACATATCTAAAAACCTCGTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P69890

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

71.429

91.304

0.652

Multiple sequence alignment