Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   BS11774_RS11315 Genome accession   NZ_CP026010
Coordinates   2155057..2157924 (+) Length   955 a.a.
NCBI ID   WP_128473768.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2150057..2162924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS11290 (BS11774_11240) yhaR 2150471..2151238 (+) 768 WP_128473764.1 enoyl-CoA hydratase -
  BS11774_RS11295 (BS11774_11245) yhzD 2151259..2151444 (-) 186 WP_041345192.1 YhzD family protein -
  BS11774_RS11300 (BS11774_11250) yhaQ 2151571..2152467 (+) 897 WP_128473765.1 ABC transporter ATP-binding protein -
  BS11774_RS11305 (BS11774_11255) yhaP 2152460..2153719 (+) 1260 WP_128473766.1 ABC transporter permease -
  BS11774_RS11310 (BS11774_11260) yhaO 2153826..2155052 (+) 1227 WP_128473767.1 exonuclease SbcCD subunit D -
  BS11774_RS11315 (BS11774_11265) sbcE 2155057..2157924 (+) 2868 WP_128473768.1 DNA repair/recombination ATPase SbcE Machinery gene
  BS11774_RS11320 (BS11774_11270) yhaM 2157998..2158943 (+) 946 Protein_2147 3'-5' exoribonuclease YhaM -
  BS11774_RS11325 (BS11774_11275) yhaL 2159068..2159280 (+) 213 WP_003233252.1 sporulation protein YhaL -
  BS11774_RS11330 (BS11774_11280) prsA 2159321..2160199 (-) 879 WP_024571668.1 peptidylprolyl isomerase PrsA -
  BS11774_RS11335 (BS11774_11285) yhzE1 2160359..2160445 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  BS11774_RS11340 (BS11774_11290) yhzE2 2160569..2160655 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  BS11774_RS11350 (BS11774_11300) yhaJ 2160998..2161516 (-) 519 WP_003245590.1 DUF3267 domain-containing protein -
  BS11774_RS11355 (BS11774_11305) yhaI 2161724..2162065 (+) 342 WP_009966921.1 YhaI family protein -
  BS11774_RS11360 (BS11774_11310) scoC 2162062..2162673 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 955 a.a.        Molecular weight: 110155.13 Da        Isoelectric Point: 6.4150

>NTDB_id=221656 BS11774_RS11315 WP_128473768.1 2155057..2157924(+) (sbcE) [Bacillus subtilis strain ATCC 11774]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLGEKRTLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPNKELLAKETLIQ
ELSAGFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDVEKAVHAASSAILENSQRKDKEAALRAYDETQGQHQLTFFERQQAKQKKTVIAAGMLFIVLFSLLQQWIPAI
SFGAALIVYWLVSGKPSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQQFEQWEAE
MAPSFTQVERFMKELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLRPVNQSQDISISDAL
HTLRKNIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKDTENKLHHV
NAQLQGGYPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGLVSDLKLQTEMQKERVKE
TAKKWASIQMIKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEELSQGTCEQ
LYTAIRFALAVTRQGGSKLPFQLDDSFVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHSSQIIHLVS

Nucleotide


Download         Length: 2868 bp        

>NTDB_id=221656 BS11774_RS11315 WP_128473768.1 2155057..2157924(+) (sbcE) [Bacillus subtilis strain ATCC 11774]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATATGGCAAATTTTCCAATCGGACCTTTCACTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTTATTGAAAGTATGCTGTTCGGTT
TTCCAAAAACAAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAATATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTTGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGATAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGGGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAACCATTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACATGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTGCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCAATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGGGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCCGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGTGGAAAAGGCCGTTCATGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAGCTAACGTTTTTTGAAAGACAGCAGGCTA
AACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTGCTGCAGCAATGGATTCCCGCCATA
AGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAACCGTCTTCTCGAAACAGCCGAGAGACAAGACAGCC
CATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGGATGACCGCAATAAGCAGCACCTTC
TCACACAGCGTGCAGCGCTCCAGCAAAAGGAGGCGGCGTATGAAAGGGTCATCCAGCAGTTTGAACAGTGGGAAGCCGAA
ATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAAAGAGCTCGGATTTAAGGAAGATCCATCATTTTTGCTTGATGC
ATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACTATTGAAGCAGGCAGGCTGAAAAAGC
ACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCGTCCAGTGAATCAGAGTCAGGATATCTCCATTTCGGACGCCCTT
CACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGAAATTGAAACAGATATTCATTATAC
AAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTGAACAGTTATTTGCCGCGGCTGCTG
CAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGATACGGAGAACAAGCTTCATCACGTA
AACGCACAGCTTCAAGGCGGGTACCCGGAGGAACTTGAACTGGCGGATTCCAATACGCTTTCTGAATTGAAAGATAAGCA
ATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCAGCCAAATCGCACTGCTCTCAGTCA
AACAGGAACAATTAGAGGCCTCGGGATTGGTGTCAGACCTCAAGCTTCAAACCGAAATGCAAAAAGAACGTGTAAAAGAA
ACGGCTAAAAAATGGGCCTCGATACAAATGATCAAACAGGTGATCAGAAACAAATTGGAGCGGCATAAAAAAATCGAGCT
TCCGCGCCTTCTAGAGACGGCAGGAGAATTCTTCCGCCCTCTGACTGACGGAAACTACCAAACCATTTATTTTTCCGAAA
CGGATGATTCGATCATGGTTATGCATCGAGATGGAACTGTCTATCATGCGGAAGAGCTGTCACAAGGGACGTGTGAACAG
CTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGGTGGGTCAAAGCTTCCGTTCCAGCTTGACGACAGTTT
TGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTATCTGAAGGCGGTAGGCAGATTTTGT
ATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCATTTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

97.819

100

0.986

Multiple sequence alignment