Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BLMD_RS17045 Genome accession   NZ_CP020352
Coordinates   3375956..3376594 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain MDJK30     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3370956..3381594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS17010 (BLMD_17010) - 3372146..3372577 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  BLMD_RS17015 (BLMD_17015) - 3372577..3372918 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  BLMD_RS17020 (BLMD_17020) - 3372911..3374389 (+) 1479 WP_026580052.1 Na+/H+ antiporter subunit D -
  BLMD_RS17025 (BLMD_17025) - 3374395..3374871 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  BLMD_RS17030 (BLMD_17030) - 3374871..3375155 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  BLMD_RS17035 (BLMD_17035) mnhG 3375139..3375513 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  BLMD_RS17040 (BLMD_17040) - 3375550..3375939 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  BLMD_RS17045 (BLMD_17045) comA 3375956..3376594 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  BLMD_RS17050 (BLMD_17050) - 3376681..3378992 (-) 2312 Protein_3312 ATP-binding protein -
  BLMD_RS17055 (BLMD_17055) comX 3379004..3379177 (-) 174 WP_080131484.1 competence pheromone ComX -
  BLMD_RS17060 (BLMD_17060) - 3379181..3380062 (-) 882 WP_080131485.1 polyprenyl synthetase family protein -
  BLMD_RS17065 (BLMD_17065) degQ 3380249..3380389 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  BLMD_RS17075 (BLMD_17075) - 3381001..3381222 (+) 222 WP_229029875.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=221656 BLMD_RS17045 WP_003184849.1 3375956..3376594(-) (comA) [Bacillus paralicheniformis strain MDJK30]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=221656 BLMD_RS17045 WP_003184849.1 3375956..3376594(-) (comA) [Bacillus paralicheniformis strain MDJK30]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATAACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment