Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BS11774_RS11020 Genome accession   NZ_CP026010
Coordinates   2097471..2098118 (+) Length   215 a.a.
NCBI ID   WP_069837394.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2092471..2103118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS11005 (BS11774_10955) glpD 2092642..2094309 (+) 1668 WP_041338128.1 glycerol-3-phosphate dehydrogenase -
  BS11774_RS11010 (BS11774_10960) pgcA 2094441..2096186 (+) 1746 WP_128473748.1 phosphoglucomutase -
  BS11774_RS11015 (BS11774_10965) yhcY 2096335..2097474 (+) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  BS11774_RS11020 (BS11774_10970) vraR 2097471..2098118 (+) 648 WP_069837394.1 two-component system response regulator YhcZ Regulator
  BS11774_RS11025 (BS11774_10975) yhdA 2098115..2098639 (+) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  BS11774_RS11030 (BS11774_10980) yhdB 2098654..2098896 (-) 243 WP_003233373.1 YhdB family protein -
  BS11774_RS11035 (BS11774_10985) yhdC 2099097..2099420 (+) 324 WP_003233371.1 YqzG/YhdC family protein -
  BS11774_RS11040 (BS11774_10990) lytF 2099462..2100922 (-) 1461 WP_128473749.1 peptidoglycan endopeptidase LytF -
  BS11774_RS11045 (BS11774_10995) nsrR 2101076..2101516 (-) 441 WP_003245378.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24148.79 Da        Isoelectric Point: 6.5025

>NTDB_id=221654 BS11774_RS11020 WP_069837394.1 2097471..2098118(+) (vraR) [Bacillus subtilis strain ATCC 11774]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPQTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=221654 BS11774_RS11020 WP_069837394.1 2097471..2098118(+) (vraR) [Bacillus subtilis strain ATCC 11774]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACGGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGCAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.455

97.209

0.442
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409