Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   BLMD_RS13460 Genome accession   NZ_CP020352
Coordinates   2696266..2696442 (+) Length   58 a.a.
NCBI ID   WP_023855184.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context

Location: 2691266..2701442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS13440 (BLMD_13440) gcvT 2691907..2693001 (-) 1095 WP_020452162.1 glycine cleavage system aminomethyltransferase GcvT -
  BLMD_RS13450 (BLMD_13450) - 2693595..2695274 (+) 1680 WP_020452163.1 DEAD/DEAH box helicase -
  BLMD_RS13455 (BLMD_13455) - 2695281..2696075 (+) 795 WP_020452164.1 YqhG family protein -
  BLMD_RS13460 (BLMD_13460) sinI 2696266..2696442 (+) 177 WP_023855184.1 anti-repressor SinI Regulator
  BLMD_RS13465 (BLMD_13465) sinR 2696476..2696811 (+) 336 WP_023855185.1 transcriptional regulator SinR Regulator
  BLMD_RS13470 (BLMD_13470) tasA 2696916..2697710 (-) 795 WP_048349970.1 biofilm matrix protein TasA -
  BLMD_RS13475 (BLMD_13475) sipW 2697783..2698367 (-) 585 WP_023855186.1 signal peptidase I SipW -
  BLMD_RS13480 (BLMD_13480) tapA 2698364..2699092 (-) 729 WP_023855187.1 amyloid fiber anchoring/assembly protein TapA -
  BLMD_RS13485 (BLMD_13485) - 2699370..2699690 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  BLMD_RS13490 (BLMD_13490) - 2699720..2699902 (-) 183 WP_020452171.1 YqzE family protein -
  BLMD_RS13495 (BLMD_13495) comGG 2699991..2700356 (-) 366 WP_048349968.1 competence type IV pilus minor pilin ComGG -
  BLMD_RS13500 (BLMD_13500) comGF 2700368..2700850 (-) 483 WP_230459149.1 competence type IV pilus minor pilin ComGF -
  BLMD_RS13505 (BLMD_13505) comGE 2700765..2701112 (-) 348 WP_025811161.1 competence type IV pilus minor pilin ComGE -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6709.46 Da        Isoelectric Point: 4.5938

>NTDB_id=221641 BLMD_RS13460 WP_023855184.1 2696266..2696442(+) (sinI) [Bacillus paralicheniformis strain MDJK30]
MNKDKNEKEELDEEWTELIKHALEQGISPEDIRIFLNLGEKSSKPSASIERSHSINPF

Nucleotide


Download         Length: 177 bp        

>NTDB_id=221641 BLMD_RS13460 WP_023855184.1 2696266..2696442(+) (sinI) [Bacillus paralicheniformis strain MDJK30]
ATGAATAAAGATAAAAATGAGAAAGAAGAATTGGATGAGGAGTGGACAGAACTGATTAAACACGCTCTTGAACAAGGCAT
TAGTCCAGAGGATATACGTATTTTTCTCAATTTGGGTGAGAAGTCTTCAAAACCTTCCGCATCAATTGAAAGAAGTCATT
CAATAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

50

100

0.5

Multiple sequence alignment