Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BS11774_RS01485 Genome accession   NZ_CP026010
Coordinates   265874..266509 (-) Length   211 a.a.
NCBI ID   WP_029318425.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 260874..271509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS01465 (BS11774_01455) yvzF 261930..262115 (-) 186 WP_128473270.1 YvzF family protein -
  BS11774_RS01470 (BS11774_01460) gerAA 262234..263682 (+) 1449 WP_128473271.1 spore germination receptor protein GerAA -
  BS11774_RS01475 (BS11774_01465) gerAB 263651..264748 (+) 1098 WP_128473272.1 spore germination receptor protein GerAB -
  BS11774_RS01480 (BS11774_01470) gerAC 264745..265866 (+) 1122 WP_128473273.1 spore germination receptor protein GerAC -
  BS11774_RS01485 (BS11774_01475) vraR 265874..266509 (-) 636 WP_029318425.1 two-component system response regulator LiaR Regulator
  BS11774_RS01490 (BS11774_01480) liaS 266487..267569 (-) 1083 WP_041333103.1 two-component system sensor histidine kinase LiaS -
  BS11774_RS01495 (BS11774_01485) liaF 267566..268291 (-) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  BS11774_RS01500 (BS11774_01490) liaG 268325..269197 (-) 873 WP_128473274.1 DUF4097 domain-containing protein -
  BS11774_RS01505 (BS11774_01495) liaH 269298..269975 (-) 678 WP_041339020.1 stress responsive protein LiaH -
  BS11774_RS01510 (BS11774_01500) liaI 270002..270382 (-) 381 WP_003228504.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23123.77 Da        Isoelectric Point: 5.0163

>NTDB_id=221600 BS11774_RS01485 WP_029318425.1 265874..266509(-) (vraR) [Bacillus subtilis strain ATCC 11774]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=221600 BS11774_RS01485 WP_029318425.1 265874..266509(-) (vraR) [Bacillus subtilis strain ATCC 11774]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403