Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CYK57_RS11055 Genome accession   NZ_CP026009
Coordinates   2332659..2333321 (+) Length   220 a.a.
NCBI ID   WP_005599756.1    Uniprot ID   A3N3Q8
Organism   Actinobacillus pleuropneumoniae strain App6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2327659..2338321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK57_RS11020 (CYK57_02258) - 2328090..2328650 (-) 561 WP_005606066.1 TIGR00730 family Rossman fold protein -
  CYK57_RS11025 (CYK57_02259) - 2328713..2329036 (+) 324 WP_005606068.1 MazG-like family protein -
  CYK57_RS11030 (CYK57_02260) crp 2329092..2329766 (-) 675 WP_005599747.1 cAMP-activated global transcriptional regulator CRP Regulator
  CYK57_RS11035 (CYK57_02261) - 2329844..2330062 (-) 219 WP_005599748.1 YheU family protein -
  CYK57_RS11040 (CYK57_02262) slmA 2330068..2330676 (-) 609 WP_005620316.1 nucleoid occlusion factor SlmA -
  CYK57_RS11045 (CYK57_02264) dut 2330782..2331237 (-) 456 WP_005606071.1 dUTP diphosphatase -
  CYK57_RS11050 (CYK57_02265) coaBC 2331246..2332451 (-) 1206 WP_005602882.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CYK57_RS11055 (CYK57_02266) radC 2332659..2333321 (+) 663 WP_005599756.1 DNA repair protein RadC Machinery gene
  CYK57_RS11060 (CYK57_02267) rpmB 2333490..2333726 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  CYK57_RS11065 (CYK57_02268) rpmG 2333738..2333908 (+) 171 WP_005599764.1 50S ribosomal protein L33 -
  CYK57_RS11070 (CYK57_02269) - 2334321..2334881 (+) 561 WP_005599767.1 hypothetical protein -
  CYK57_RS11075 (CYK57_02270) - 2335162..2336526 (+) 1365 WP_009874862.1 diaminobutyrate--2-oxoglutarate transaminase -
  CYK57_RS11080 (CYK57_02271) ddc 2336655..2338190 (+) 1536 WP_009874861.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25014.07 Da        Isoelectric Point: 5.7943

>NTDB_id=221594 CYK57_RS11055 WP_005599756.1 2332659..2333321(+) (radC) [Actinobacillus pleuropneumoniae strain App6]
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=221594 CYK57_RS11055 WP_005599756.1 2332659..2333321(+) (radC) [Actinobacillus pleuropneumoniae strain App6]
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGTTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAACTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(102-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N3Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

63.721

97.727

0.623