Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdE   Type   Machinery gene
Locus tag   B5K38_RS09080 Genome accession   NZ_CP020120
Coordinates   1703351..1703569 (-) Length   72 a.a.
NCBI ID   WP_119721361.1    Uniprot ID   A0A2Z5PNQ3
Organism   Methanococcus maripaludis strain OS7mut1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698351..1708569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5K38_RS09060 - 1699136..1700422 (-) 1287 WP_119721357.1 phosphoadenosine phosphosulfate reductase family protein -
  B5K38_RS09065 recJ 1700472..1701875 (-) 1404 WP_119721358.1 single-stranded-DNA-specific exonuclease RecJ -
  B5K38_RS09070 - 1702008..1702649 (+) 642 WP_119721359.1 hypothetical protein -
  B5K38_RS09075 - 1702650..1703333 (-) 684 WP_119721360.1 metallophosphoesterase -
  B5K38_RS09080 epdE 1703351..1703569 (-) 219 WP_119721361.1 class III signal peptide-containing protein Machinery gene
  B5K38_RS09085 MMJJ_RS05685 1703600..1703824 (-) 225 WP_119721362.1 class III signal peptide-containing protein Machinery gene
  B5K38_RS09090 - 1704233..1704430 (+) 198 WP_013999971.1 AtpZ/AtpI family protein -
  B5K38_RS09095 - 1704448..1705449 (+) 1002 WP_119721363.1 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 -
  B5K38_RS09100 - 1705467..1705673 (+) 207 WP_011171631.1 ferredoxin family protein -
  B5K38_RS09105 - 1705685..1706368 (+) 684 WP_119721364.1 hypothetical protein -
  B5K38_RS09110 comE 1706381..1706938 (-) 558 WP_119721365.1 sulfopyruvate decarboxylase subunit beta -
  B5K38_RS09115 - 1706940..1707608 (-) 669 WP_119721366.1 HisA/HisF family protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7457.62 Da        Isoelectric Point: 10.1014

>NTDB_id=221350 B5K38_RS09080 WP_119721361.1 1703351..1703569(-) (epdE) [Methanococcus maripaludis strain OS7mut1]
MFKKLTSKKGQIAMELGILVMAAVAVAAIAAYFYATNVSNTGKQITNSTNQTTQALADAISDATAKMSNISG

Nucleotide


Download         Length: 219 bp        

>NTDB_id=221350 B5K38_RS09080 WP_119721361.1 1703351..1703569(-) (epdE) [Methanococcus maripaludis strain OS7mut1]
ATGTTTAAAAAACTAACATCAAAAAAAGGTCAAATAGCAATGGAACTCGGTATTCTTGTTATGGCAGCAGTTGCAGTTGC
AGCAATAGCAGCATACTTCTACGCAACGAATGTTAGCAACACTGGAAAACAGATTACAAATTCGACAAACCAGACTACAC
AAGCGTTAGCTGATGCAATATCTGATGCTACGGCAAAAATGTCAAATATTTCGGGTTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5PNQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdE Methanococcus maripaludis strain DSM 2067

91.045

93.056

0.847
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

56.338

98.611

0.556

Multiple sequence alignment