Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXW53_RS18120 Genome accession   NZ_CP025920
Coordinates   3639110..3639847 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 103605     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3634110..3644847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW53_RS18090 yfiL 3634268..3634633 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CXW53_RS18095 aroF 3634843..3635913 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CXW53_RS18100 tyrA 3635924..3637045 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CXW53_RS18105 pheA 3637088..3638248 (-) 1161 WP_126130088.1 bifunctional chorismate mutase/prephenate dehydratase -
  CXW53_RS18110 pheL 3638347..3638394 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CXW53_RS18115 raiA 3638498..3638839 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXW53_RS18120 comL 3639110..3639847 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXW53_RS18125 rluD 3639982..3640962 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXW53_RS18130 yfiH 3640959..3641690 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CXW53_RS18135 clpC 3641820..3644393 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=221259 CXW53_RS18120 WP_000197686.1 3639110..3639847(-) (comL) [Escherichia coli strain 103605]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=221259 CXW53_RS18120 WP_000197686.1 3639110..3639847(-) (comL) [Escherichia coli strain 103605]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment