Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   B4U62_RS13350 Genome accession   NZ_CP020102
Coordinates   2557273..2557704 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain NCIB 3610     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2552273..2562704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U62_RS13300 (B4U62_13300) sinI 2552467..2552640 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  B4U62_RS13305 (B4U62_13305) sinR 2552674..2553009 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  B4U62_RS13310 (B4U62_13310) tasA 2553102..2553887 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  B4U62_RS13315 (B4U62_13315) sipW 2553951..2554523 (-) 573 WP_003246088.1 signal peptidase I SipW -
  B4U62_RS13320 (B4U62_13320) tapA 2554507..2555268 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  B4U62_RS13325 (B4U62_13325) yqzG 2555540..2555866 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  B4U62_RS13330 (B4U62_13330) spoIITA 2555908..2556087 (-) 180 WP_003230176.1 YqzE family protein -
  B4U62_RS13335 (B4U62_13335) comGG 2556158..2556532 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  B4U62_RS13340 (B4U62_13340) comGF 2556533..2556916 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  B4U62_RS13345 (B4U62_13345) comGE 2556942..2557289 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  B4U62_RS13350 (B4U62_13350) comGD 2557273..2557704 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  B4U62_RS13355 (B4U62_13355) comGC 2557694..2557990 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  B4U62_RS13360 (B4U62_13360) comGB 2558004..2559041 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  B4U62_RS13365 (B4U62_13365) comGA 2559028..2560098 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  B4U62_RS13375 (B4U62_13375) corA 2560510..2561463 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=221173 B4U62_RS13350 WP_004398628.1 2557273..2557704(-) (comGD) [Bacillus subtilis strain NCIB 3610]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=221173 B4U62_RS13350 WP_004398628.1 2557273..2557704(-) (comGD) [Bacillus subtilis strain NCIB 3610]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment