Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   B4X03_RS05480 Genome accession   NZ_CP020085
Coordinates   1095249..1095635 (+) Length   128 a.a.
NCBI ID   WP_026917117.1    Uniprot ID   -
Organism   Glaesserella parasuis strain CL120103     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1090249..1100635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4X03_RS05460 - 1090839..1093394 (-) 2556 WP_035490200.1 penicillin-binding protein 1A -
  B4X03_RS05465 comA 1093548..1094225 (+) 678 WP_005712510.1 hypothetical protein Machinery gene
  B4X03_RS05470 comB 1094201..1094722 (+) 522 WP_005712507.1 hypothetical protein Machinery gene
  B4X03_RS05475 comC 1094719..1095249 (+) 531 WP_015940159.1 hypothetical protein Machinery gene
  B4X03_RS05480 comD 1095249..1095635 (+) 387 WP_026917117.1 pilus assembly protein PilP Machinery gene
  B4X03_RS05485 comE 1095645..1096907 (+) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  B4X03_RS05490 nusB 1096986..1097399 (+) 414 WP_005712500.1 transcription antitermination factor NusB -
  B4X03_RS05495 thiL 1097408..1098376 (+) 969 WP_082259161.1 thiamine-phosphate kinase -
  B4X03_RS05500 - 1098379..1098849 (+) 471 WP_021113432.1 phosphatidylglycerophosphatase A -
  B4X03_RS05505 - 1098851..1099492 (+) 642 WP_157888943.1 LysE family transporter -
  B4X03_RS05510 trxA 1099776..1100090 (+) 315 WP_015940165.1 thioredoxin -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 15003.17 Da        Isoelectric Point: 5.7179

>NTDB_id=220966 B4X03_RS05480 WP_026917117.1 1095249..1095635(+) (comD) [Glaesserella parasuis strain CL120103]
MRLCFFYFVFLSAVTMADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDK
KQLIDLYPDDYLSHSFIQIKEINFKSVSYINWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=220966 B4X03_RS05480 WP_026917117.1 1095249..1095635(+) (comD) [Glaesserella parasuis strain CL120103]
ATGCGATTATGCTTTTTCTATTTTGTCTTTCTAAGTGCTGTTACTATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCA
AGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTGTACGCCAACAGAGAAGGTGAACGAAATTCACCTCA
CCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCGACGATAAAATCCGAGCGATTTTTATAGATGATAAA
AAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCCTTTATTCAAATTAAAGAAATTAATTTTAAATCTGT
TAGTTATATTAATTGGCAAAAAACAGAAAATTGCCAATCCCCTAAATTGTTTACTTCAAAATTTTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(13-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

93.805

88.281

0.828

Multiple sequence alignment