Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   B4X03_RS05465 Genome accession   NZ_CP020085
Coordinates   1093548..1094225 (+) Length   225 a.a.
NCBI ID   WP_005712510.1    Uniprot ID   -
Organism   Glaesserella parasuis strain CL120103     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1088548..1099225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4X03_RS05450 aroB 1088985..1090073 (-) 1089 WP_005712516.1 3-dehydroquinate synthase -
  B4X03_RS05455 aroK 1090088..1090609 (-) 522 WP_005712514.1 shikimate kinase AroK -
  B4X03_RS05460 - 1090839..1093394 (-) 2556 WP_035490200.1 penicillin-binding protein 1A -
  B4X03_RS05465 comA 1093548..1094225 (+) 678 WP_005712510.1 hypothetical protein Machinery gene
  B4X03_RS05470 comB 1094201..1094722 (+) 522 WP_005712507.1 hypothetical protein Machinery gene
  B4X03_RS05475 comC 1094719..1095249 (+) 531 WP_015940159.1 hypothetical protein Machinery gene
  B4X03_RS05480 comD 1095249..1095635 (+) 387 WP_026917117.1 pilus assembly protein PilP Machinery gene
  B4X03_RS05485 comE 1095645..1096907 (+) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  B4X03_RS05490 nusB 1096986..1097399 (+) 414 WP_005712500.1 transcription antitermination factor NusB -
  B4X03_RS05495 thiL 1097408..1098376 (+) 969 WP_082259161.1 thiamine-phosphate kinase -
  B4X03_RS05500 - 1098379..1098849 (+) 471 WP_021113432.1 phosphatidylglycerophosphatase A -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26299.31 Da        Isoelectric Point: 7.3026

>NTDB_id=220963 B4X03_RS05465 WP_005712510.1 1093548..1094225(+) (comA) [Glaesserella parasuis strain CL120103]
MGKFFQFRTTPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSSKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYHITPLAESHLCQLNLYALRKSNSFDPTAILDCELYCLLRAVGFLTKITETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHFPHFYPYLIALGASLWNGKVSI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=220963 B4X03_RS05465 WP_005712510.1 1093548..1094225(+) (comA) [Glaesserella parasuis strain CL120103]
ATGGGTAAATTCTTTCAATTTCGTACAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAACAAGAACAACCTCACACCTTTTACTTTTCAAGCAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATTTGGCGAAAAACCTTGATACTGCCAGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCACATTACCCCTTTAGCCGAAAGCCACCTTTGCCAGCTTAATCTATATGCTCTAAGAAAAAGCAACAGCTTTG
ACCCAACGGCTATTTTAGATTGCGAACTCTACTGCCTACTACGAGCGGTAGGATTTCTGACAAAAATAACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACACTTTCCCCATTTTTATCCTTATCTTATTGCAT
TAGGAGCGAGCTTATGGAATGGCAAGGTATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

98.667

100

0.987

Multiple sequence alignment