Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | B4X03_RS05470 | Genome accession | NZ_CP020085 |
| Coordinates | 1094201..1094722 (+) | Length | 173 a.a. |
| NCBI ID | WP_005712507.1 | Uniprot ID | A0A836ME07 |
| Organism | Glaesserella parasuis strain CL120103 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1089201..1099722
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4X03_RS05455 | aroK | 1090088..1090609 (-) | 522 | WP_005712514.1 | shikimate kinase AroK | - |
| B4X03_RS05460 | - | 1090839..1093394 (-) | 2556 | WP_035490200.1 | penicillin-binding protein 1A | - |
| B4X03_RS05465 | comA | 1093548..1094225 (+) | 678 | WP_005712510.1 | hypothetical protein | Machinery gene |
| B4X03_RS05470 | comB | 1094201..1094722 (+) | 522 | WP_005712507.1 | hypothetical protein | Machinery gene |
| B4X03_RS05475 | comC | 1094719..1095249 (+) | 531 | WP_015940159.1 | hypothetical protein | Machinery gene |
| B4X03_RS05480 | comD | 1095249..1095635 (+) | 387 | WP_026917117.1 | pilus assembly protein PilP | Machinery gene |
| B4X03_RS05485 | comE | 1095645..1096907 (+) | 1263 | WP_026917118.1 | type IV pilus secretin PilQ | Machinery gene |
| B4X03_RS05490 | nusB | 1096986..1097399 (+) | 414 | WP_005712500.1 | transcription antitermination factor NusB | - |
| B4X03_RS05495 | thiL | 1097408..1098376 (+) | 969 | WP_082259161.1 | thiamine-phosphate kinase | - |
| B4X03_RS05500 | - | 1098379..1098849 (+) | 471 | WP_021113432.1 | phosphatidylglycerophosphatase A | - |
| B4X03_RS05505 | - | 1098851..1099492 (+) | 642 | WP_157888943.1 | LysE family transporter | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 20324.01 Da Isoelectric Point: 7.3557
>NTDB_id=220964 B4X03_RS05470 WP_005712507.1 1094201..1094722(+) (comB) [Glaesserella parasuis strain CL120103]
MEWQGINLNGYRQQQWLKQSQKNLKHLTACIVISTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE
MEWQGINLNGYRQQQWLKQSQKNLKHLTACIVISTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE
Nucleotide
Download Length: 522 bp
>NTDB_id=220964 B4X03_RS05470 WP_005712507.1 1094201..1094722(+) (comB) [Glaesserella parasuis strain CL120103]
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGCATTGTGATTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGCATTGTGATTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Glaesserella parasuis strain SC1401 |
97.11 |
100 |
0.971 |