Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   Vc3S01_RS23965 Genome accession   NZ_CP020077
Coordinates   1428797..1430842 (-) Length   681 a.a.
NCBI ID   WP_045369090.1    Uniprot ID   A0AAQ2Y384
Organism   Vibrio campbellii strain 20130629003S01     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423797..1435842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS23950 (Vc3S01_A1312) - 1424848..1425834 (+) 987 WP_077201620.1 peptidoglycan DD-metalloendopeptidase family protein -
  Vc3S01_RS23955 (Vc3S01_A1313) ylqF 1426155..1427099 (+) 945 WP_005426767.1 ribosome biogenesis GTPase YlqF -
  Vc3S01_RS23960 (Vc3S01_A1314) cqsA 1427389..1428690 (+) 1302 WP_283166056.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  Vc3S01_RS23965 (Vc3S01_A1315) cqsS 1428797..1430842 (-) 2046 WP_045369090.1 hybrid sensor histidine kinase/response regulator Regulator
  Vc3S01_RS23970 (Vc3S01_A1316) - 1431146..1431763 (+) 618 WP_050914172.1 HAD family phosphatase -
  Vc3S01_RS23975 (Vc3S01_A1317) - 1431838..1432386 (-) 549 WP_077201618.1 GNAT family N-acetyltransferase -
  Vc3S01_RS23980 (Vc3S01_A1318) - 1432680..1433804 (+) 1125 WP_045369066.1 fatty acid desaturase -
  Vc3S01_RS23985 (Vc3S01_A1319) dcuC 1434187..1435554 (+) 1368 WP_012129600.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77825.66 Da        Isoelectric Point: 5.5065

>NTDB_id=220883 Vc3S01_RS23965 WP_045369090.1 1428797..1430842(-) (cqsS) [Vibrio campbellii strain 20130629003S01]
MDAIRKVYQYAEPNLTLVGWMGFVGFPIYYIVWEFMFPQPYENLPLRILCSVLFFGIIYRNRTPFEWRRFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFAQTFAGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKEGKKEQYTLSDEDVTLLREVSSDAMK
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEFANQIVVTDNGSGIAPEVLQSIFQDFYTTGKSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSSAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMGFELTVLDVPAVLKKKEYEFEFDLILIDME
SLDARGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVSFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDST
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=220883 Vc3S01_RS23965 WP_045369090.1 1428797..1430842(-) (cqsS) [Vibrio campbellii strain 20130629003S01]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTACCCTCGTAGGATGGATGGGCTTCGTCGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCTTACGAAAACCTACCGCTTCGTATTCTCTGCTCAGTCTTAT
TTTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTAGGTTCTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTACCTTGCTTCTTCTTTTACATGTTGCTGATGAACAACTGGTCGAATGTATGGGTGATGTCGTTTATGTCGGC
GATTTTTCTGCACATTCTGCTCGTGCATATCACATCGGTGATGTTTGCCCAGACATTTGCGGGAATTGGTCTGGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCACCTCGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTCTTTGGTAACTTGTTCTATTTCCGAAACCAGGTAGAGCATGAAGCAAAAGTCTCAATCGCAAAGTCTTTTGGGGCAGG
TATCGCCCACGAAATGCGAAACCCACTTAGTGGTTTATTAACTTCTATCGATGTCATTCAATCCGTGTTGCCAAATCCGA
AAGAGGGCAAGAAAGAGCAGTACACGTTAAGTGATGAAGACGTGACACTGTTACGAGAAGTCAGCAGTGACGCAATGAAG
ATCATCCATTCAGGAAACGAAACCATTGATTTGCTTCTTACCTCAATTGACGAGAACCGTGTGTCTCGCTCGACATTTAA
AAAGCACTCTGCACAATCTGTTGTTGAGAGTGCGATTGAAAGTTTCAGTTACAAACGATCGACAGACCGTTTTGCTATCT
CCTTGGATGTAAGAAGTGAATTCGATTTCTTGGGCAGCGATACATTACTTAAATATGTGATGTACAACTTGTTCAAGAAC
GCCTTCCACCACCGTAGTTCAGAGGATTTCCATATTCACGTCACCATGTACAGTGATGAATTTGCCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCACCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAAGTCAGGAA
ATTATGGCCTTGGATTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGTGGTGATATTCGTTGCCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGCGCAGTCAAAGAGATTAAGAGTGAGCTAACCAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGGGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTAAAAAAGAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGACATGGAG
AGTTTAGACGCCCGTGGCAGCCATATAGATAAGGTTGAGTCGTTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATTCAAAGAGCGAGAAGCGTTTCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTTTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAGCCGCTCGATTCAACA
AACAAGCGAACCATTATGGTGGTTGACGATAATGAGTCTTTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACCGAAGATGGGCTGCAGGCAATCAACGCATTGAATGAGAACAATGTTGACTTAATCCTAATGGACA
TCGAAATGCCGGTGATGGATGGTGTAGAAGCATCTCGTCAAATCAGAGGTTCAAATAAGGCGTACGCTTCGGTGCCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTCGACAAGATTGGTTCATCTGGCATGTCGGATTTCATCGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.175

100

0.485

Multiple sequence alignment