Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   Vc3S01_RS03260 Genome accession   NZ_CP020076
Coordinates   653017..653634 (-) Length   205 a.a.
NCBI ID   WP_005428669.1    Uniprot ID   A0AAQ2XXV5
Organism   Vibrio campbellii strain 20130629003S01     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 648017..658634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS03245 (Vc3S01_0569) aceF 649049..650947 (+) 1899 WP_077200210.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  Vc3S01_RS03250 (Vc3S01_0570) lpdA 651191..652621 (+) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  Vc3S01_RS03260 (Vc3S01_0571) opaR 653017..653634 (-) 618 WP_005428669.1 transcriptional regulator OpaR Regulator
  Vc3S01_RS03265 (Vc3S01_0572) hpt 653956..654486 (+) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  Vc3S01_RS03270 (Vc3S01_0573) can 654573..655241 (-) 669 WP_005531727.1 carbonate dehydratase -
  Vc3S01_RS03275 (Vc3S01_0574) - 655525..657195 (+) 1671 WP_077200212.1 SulP family inorganic anion transporter -
  Vc3S01_RS03280 (Vc3S01_0575) - 657436..658353 (+) 918 WP_077200213.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=220857 Vc3S01_RS03260 WP_005428669.1 653017..653634(-) (opaR) [Vibrio campbellii strain 20130629003S01]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=220857 Vc3S01_RS03260 WP_005428669.1 653017..653634(-) (opaR) [Vibrio campbellii strain 20130629003S01]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment