Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CJE_RS03675 Genome accession   NC_003912
Coordinates   673653..674426 (+) Length   257 a.a.
NCBI ID   WP_002867721.1    Uniprot ID   -
Organism   Campylobacter jejuni RM1221     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 668653..679426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJE_RS03660 (CJE0734) - 669502..671436 (-) 1935 WP_002867720.1 RNB domain-containing ribonuclease -
  CJE_RS03665 (CJE0735) ilvC 671555..672577 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  CJE_RS03670 (CJE0736) - 672581..673663 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  CJE_RS03675 (CJE0737) dprA 673653..674426 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  CJE_RS03680 (CJE0738) ruvX 674423..674806 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  CJE_RS03685 (CJE0739) - 674835..675674 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJE_RS03690 (CJE0740) msrA 675850..676347 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJE_RS03695 (CJE0741) ppa 676389..676907 (-) 519 WP_002867724.1 inorganic diphosphatase -
  CJE_RS03700 (CJE0742) adk 676917..677495 (-) 579 WP_011049749.1 adenylate kinase -
  CJE_RS03705 (CJE0743) aspS 677492..679243 (-) 1752 WP_011049750.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28878.64 Da        Isoelectric Point: 6.4874

>NTDB_id=22040 CJE_RS03675 WP_002867721.1 673653..674426(+) (dprA) [Campylobacter jejuni RM1221]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
TKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=22040 CJE_RS03675 WP_002867721.1 673653..674426(+) (dprA) [Campylobacter jejuni RM1221]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
ACAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment