Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXV93_RS21045 Genome accession   NZ_CP025856
Coordinates   4239155..4239892 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 504838     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4234155..4244892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV93_RS21010 - 4235075..4236184 (+) 1110 WP_000132830.1 phage late control D family protein -
  CXV93_RS21015 - 4236227..4236487 (+) 261 WP_000488108.1 ogr/Delta-like zinc finger family protein -
  CXV93_RS21020 - 4236679..4236819 (+) 141 WP_000078920.1 Hok/Gef family protein -
  CXV93_RS21025 - 4236955..4237251 (+) 297 WP_001519189.1 TM2 domain-containing protein -
  CXV93_RS21030 - 4237444..4237641 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  CXV93_RS21035 - 4237586..4238392 (+) 807 WP_001696625.1 site-specific DNA-methyltransferase -
  CXV93_RS21040 raiA 4238543..4238884 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXV93_RS21045 comL 4239155..4239892 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXV93_RS21050 rluD 4240027..4241007 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXV93_RS21055 yfiH 4241004..4241735 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CXV93_RS21060 clpC 4241865..4244438 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=220378 CXV93_RS21045 WP_000197686.1 4239155..4239892(-) (comL) [Escherichia coli strain 504838]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=220378 CXV93_RS21045 WP_000197686.1 4239155..4239892(-) (comL) [Escherichia coli strain 504838]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTACGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment