Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BS21228_RS10240 Genome accession   NZ_CP020023
Coordinates   1892539..1892658 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain ATCC 21228     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1887539..1897658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS21228_RS10215 (BS21228_10170) albG 1887703..1888404 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  BS21228_RS10220 (BS21228_10175) ywhL 1888410..1889786 (-) 1377 WP_014481223.1 YncE family protein -
  BS21228_RS10225 (BS21228_10180) ywhK 1889825..1891180 (-) 1356 WP_014481224.1 YncE family protein -
  BS21228_RS23650 (BS21228_10185) - 1891177..1891407 (-) 231 Protein_2029 hypothetical protein -
  BS21228_RS10235 (BS21228_10190) rapF 1891410..1892555 (+) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  BS21228_RS10240 (BS21228_10195) phrF 1892539..1892658 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  BS21228_RS10245 (BS21228_10200) - 1892756..1893183 (+) 428 Protein_2032 YbaK/EbsC family protein -
  BS21228_RS10250 (BS21228_10205) speB 1893248..1894120 (-) 873 WP_003227545.1 agmatinase -
  BS21228_RS10255 (BS21228_10210) speE 1894181..1895011 (-) 831 WP_003227543.1 spermidine synthase -
  BS21228_RS10260 (BS21228_10215) pbpG 1895213..1897288 (+) 2076 WP_014481227.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=220338 BS21228_RS10240 WP_009968329.1 1892539..1892658(+) (phrF) [Bacillus subtilis strain ATCC 21228]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=220338 BS21228_RS10240 WP_009968329.1 1892539..1892658(+) (phrF) [Bacillus subtilis strain ATCC 21228]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment