Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B4602_RS11030 Genome accession   NZ_CP020020
Coordinates   2128970..2129365 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2123970..2134365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4602_RS11000 thiE 2124431..2125072 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  B4602_RS11005 thiM 2125074..2125865 (-) 792 WP_042727552.1 hydroxyethylthiazole kinase -
  B4602_RS11010 thiD 2125849..2126679 (-) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  B4602_RS11015 tenA 2126672..2127361 (-) 690 WP_000396074.1 thiaminase II -
  B4602_RS11025 sceD 2127886..2128581 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  B4602_RS11030 ssb 2128970..2129365 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  B4602_RS11035 - 2129559..2129999 (+) 441 WP_000846746.1 YwpF-like family protein -
  B4602_RS11040 fabZ 2130058..2130498 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  B4602_RS11045 murA 2130532..2131797 (-) 1266 WP_042727551.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  B4602_RS11050 - 2131908..2132141 (-) 234 WP_000384523.1 DUF1146 family protein -
  B4602_RS11055 - 2132273..2132365 (-) 93 WP_001790611.1 hypothetical protein -
  B4602_RS11060 - 2132704..2133108 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=220254 B4602_RS11030 WP_000932694.1 2128970..2129365(-) (ssb) [Staphylococcus aureus strain ATCC 6538]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=220254 B4602_RS11030 WP_000932694.1 2128970..2129365(-) (ssb) [Staphylococcus aureus strain ATCC 6538]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment