Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXX11_RS06690 Genome accession   NZ_CP025851
Coordinates   1337138..1337875 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 510016     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1332138..1342875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX11_RS06675 clpC 1332592..1335165 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CXX11_RS06680 yfiH 1335295..1336026 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  CXX11_RS06685 rluD 1336023..1337003 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXX11_RS06690 comL 1337138..1337875 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXX11_RS06695 raiA 1338146..1338487 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXX11_RS06700 pheL 1338591..1338638 (+) 48 WP_010723158.1 phe operon leader peptide -
  CXX11_RS06705 pheA 1338737..1339897 (+) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  CXX11_RS06710 tyrA 1339940..1341061 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CXX11_RS06715 aroF 1341072..1342142 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CXX11_RS06720 yfiL 1342352..1342717 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=220248 CXX11_RS06690 WP_000197686.1 1337138..1337875(+) (comL) [Escherichia coli strain 510016]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=220248 CXX11_RS06690 WP_000197686.1 1337138..1337875(+) (comL) [Escherichia coli strain 510016]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376