Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   B4602_RS08110 Genome accession   NZ_CP020020
Coordinates   1618143..1618829 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1613143..1623829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4602_RS08090 rpsT 1614057..1614308 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  B4602_RS08095 holA 1614353..1615327 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  B4602_RS08100 comEC 1615384..1617585 (-) 2202 WP_001815444.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B4602_RS08105 - 1617590..1618051 (-) 462 WP_000439693.1 ComE operon protein 2 -
  B4602_RS08110 comEA 1618143..1618829 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  B4602_RS08115 - 1618869..1619585 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  B4602_RS08120 rsfS 1619588..1619941 (-) 354 WP_042727695.1 ribosome silencing factor -
  B4602_RS08125 yqeK 1619942..1620526 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  B4602_RS08130 nadD 1620516..1621085 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  B4602_RS08135 yhbY 1621088..1621378 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  B4602_RS08140 aroE 1621382..1622188 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  B4602_RS08145 yqeH 1622202..1623302 (-) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=220242 B4602_RS08110 WP_072353822.1 1618143..1618829(-) (comEA) [Staphylococcus aureus strain ATCC 6538]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=220242 B4602_RS08110 WP_072353822.1 1618143..1618829(-) (comEA) [Staphylococcus aureus strain ATCC 6538]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978

Multiple sequence alignment