Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   B4602_RS04815 Genome accession   NZ_CP020020
Coordinates   950952..951938 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 945952..956938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4602_RS04790 opp4B 946165..947127 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  B4602_RS04795 opp4C 947139..948020 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  B4602_RS04800 trpS 948062..949051 (-) 990 WP_000448943.1 tryptophan--tRNA ligase -
  B4602_RS04805 spxA 949346..949741 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  B4602_RS04810 mecA 950112..950831 (+) 720 WP_001217728.1 adaptor protein MecA -
  B4602_RS04815 coiA 950952..951938 (+) 987 WP_000959292.1 competence protein CoiA family protein Machinery gene
  B4602_RS04820 pepF 951986..953794 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  B4602_RS04825 yjbH 954254..955060 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  B4602_RS04830 - 955083..955448 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  B4602_RS04835 - 955552..956145 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  B4602_RS04840 - 956331..956678 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=220227 B4602_RS04815 WP_000959292.1 950952..951938(+) (coiA) [Staphylococcus aureus strain ATCC 6538]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=220227 B4602_RS04815 WP_000959292.1 950952..951938(+) (coiA) [Staphylococcus aureus strain ATCC 6538]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment