Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B4603_RS11000 Genome accession   NZ_CP020019
Coordinates   2148798..2149193 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08S00974     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2143798..2154193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4603_RS10975 thiE 2144397..2145038 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  B4603_RS10980 thiM 2145040..2145831 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  B4603_RS10985 thiD 2145815..2146645 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  B4603_RS10990 tenA 2146638..2147327 (-) 690 WP_000396068.1 thiaminase II -
  B4603_RS10995 sceD 2147714..2148409 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  B4603_RS11000 ssb 2148798..2149193 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  B4603_RS11005 - 2149387..2149827 (+) 441 WP_000846746.1 YwpF-like family protein -
  B4603_RS11010 fabZ 2149884..2150324 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  B4603_RS11015 murA 2150358..2151623 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  B4603_RS11020 - 2151734..2151967 (-) 234 WP_000384523.1 DUF1146 family protein -
  B4603_RS11035 - 2152620..2153024 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=220212 B4603_RS11000 WP_000932694.1 2148798..2149193(-) (ssb) [Staphylococcus aureus strain 08S00974]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=220212 B4603_RS11000 WP_000932694.1 2148798..2149193(-) (ssb) [Staphylococcus aureus strain 08S00974]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment