Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXX14_RS12765 Genome accession   NZ_CP025849
Coordinates   2648697..2649434 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 600468     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2643697..2654434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX14_RS12735 yfiL 2643855..2644220 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CXX14_RS12740 aroF 2644430..2645500 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CXX14_RS12745 tyrA 2645511..2646632 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CXX14_RS12750 pheA 2646675..2647835 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  CXX14_RS12755 pheL 2647934..2647981 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CXX14_RS12760 raiA 2648085..2648426 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXX14_RS12765 comL 2648697..2649434 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXX14_RS12770 rluD 2649569..2650549 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXX14_RS12775 yfiH 2650546..2651277 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  CXX14_RS12780 clpC 2651407..2653980 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=220203 CXX14_RS12765 WP_000197686.1 2648697..2649434(-) (comL) [Escherichia coli strain 600468]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=220203 CXX14_RS12765 WP_000197686.1 2648697..2649434(-) (comL) [Escherichia coli strain 600468]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376