Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   B4603_RS08515 Genome accession   NZ_CP020019
Coordinates   1690616..1691302 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08S00974     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1685616..1696302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4603_RS08495 rpsT 1686530..1686781 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  B4603_RS08500 holA 1686826..1687800 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  B4603_RS08505 comEC 1687857..1690058 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B4603_RS08510 - 1690063..1690524 (-) 462 WP_000439690.1 ComE operon protein 2 -
  B4603_RS08515 comEA 1690616..1691302 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  B4603_RS08520 - 1691342..1692058 (-) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  B4603_RS08525 rsfS 1692061..1692414 (-) 354 WP_001088020.1 ribosome silencing factor -
  B4603_RS08530 yqeK 1692415..1692999 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  B4603_RS08535 nadD 1692989..1693558 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  B4603_RS08540 yhbY 1693561..1693851 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  B4603_RS08545 aroE 1693855..1694661 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  B4603_RS08550 yqeH 1694675..1695775 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=220201 B4603_RS08515 WP_001825349.1 1690616..1691302(-) (comEA) [Staphylococcus aureus strain 08S00974]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=220201 B4603_RS08515 WP_001825349.1 1690616..1691302(-) (comEA) [Staphylococcus aureus strain 08S00974]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment