Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   B4603_RS02860 Genome accession   NZ_CP020019
Coordinates   583139..583708 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08S00974     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 578139..588708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4603_RS02835 cysE 579351..579998 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  B4603_RS02840 cysS 579982..581382 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  B4603_RS02845 - 581375..581779 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  B4603_RS02850 rlmB 581787..582533 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  B4603_RS02855 - 582533..583057 (+) 525 WP_000664738.1 NYN domain-containing protein -
  B4603_RS02860 sigH 583139..583708 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  B4603_RS02865 rpmG 583823..583966 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  B4603_RS02870 secE 584022..584204 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  B4603_RS02875 nusG 584217..584765 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  B4603_RS02880 rplK 584946..585368 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  B4603_RS02885 rplA 585576..586268 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  B4603_RS02890 rplJ 586540..587040 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  B4603_RS02895 rplL 587083..587451 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  B4603_RS02900 - 587626..588234 (+) 609 WP_031794927.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=220179 B4603_RS02860 WP_000872866.1 583139..583708(+) (sigH) [Staphylococcus aureus strain 08S00974]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=220179 B4603_RS02860 WP_000872866.1 583139..583708(+) (sigH) [Staphylococcus aureus strain 08S00974]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment