Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | OTEC02_RS10295 | Genome accession | NZ_CP020015 |
| Coordinates | 2184539..2184919 (-) | Length | 126 a.a. |
| NCBI ID | WP_081174159.1 | Uniprot ID | - |
| Organism | Acinetobacter lactucae strain OTEC-02 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2179539..2189919
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OTEC02_RS10265 (OTEC02_10265) | tadA | 2179606..2180109 (-) | 504 | WP_061875520.1 | tRNA adenosine(34) deaminase TadA | - |
| OTEC02_RS10270 (OTEC02_10270) | - | 2180116..2181240 (-) | 1125 | WP_080648682.1 | enoyl-CoA hydratase/isomerase family protein | - |
| OTEC02_RS10275 (OTEC02_10275) | ung | 2181237..2181950 (-) | 714 | WP_016145102.1 | uracil-DNA glycosylase | - |
| OTEC02_RS10280 (OTEC02_10280) | - | 2182004..2182600 (-) | 597 | WP_016145101.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| OTEC02_RS10285 (OTEC02_10285) | gspK | 2182828..2183787 (-) | 960 | WP_081174155.1 | type II secretion system minor pseudopilin GspK | - |
| OTEC02_RS10290 (OTEC02_10290) | xcpW | 2183787..2184539 (-) | 753 | WP_081174157.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| OTEC02_RS10295 (OTEC02_10295) | xcpV | 2184539..2184919 (-) | 381 | WP_081174159.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| OTEC02_RS10300 (OTEC02_10300) | - | 2184909..2185463 (-) | 555 | WP_016145097.1 | type II secretion system protein | - |
| OTEC02_RS10305 (OTEC02_10305) | - | 2185470..2186078 (-) | 609 | WP_014206595.1 | TetR/AcrR family transcriptional regulator | - |
| OTEC02_RS10310 (OTEC02_10310) | - | 2186115..2186888 (-) | 774 | WP_057106320.1 | TatD family hydrolase | - |
| OTEC02_RS10315 (OTEC02_10315) | - | 2186906..2187247 (-) | 342 | WP_081174161.1 | PilZ domain-containing protein | - |
| OTEC02_RS10320 (OTEC02_10320) | - | 2187258..2188238 (-) | 981 | WP_081174163.1 | DNA polymerase III subunit delta' | - |
| OTEC02_RS10325 (OTEC02_10325) | kdsB | 2188252..2189013 (-) | 762 | WP_062848588.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14057.27 Da Isoelectric Point: 9.7999
>NTDB_id=220093 OTEC02_RS10295 WP_081174159.1 2184539..2184919(-) (xcpV) [Acinetobacter lactucae strain OTEC-02]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVALNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKRKIQNGITHLVFFNYPMKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVALNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKRKIQNGITHLVFFNYPMKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=220093 OTEC02_RS10295 WP_081174159.1 2184539..2184919(-) (xcpV) [Acinetobacter lactucae strain OTEC-02]
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGCTAACTAA
AGTAGCCATGCAGTACACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAATTTGTAGCACTGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAGTGGCTTGAAGGTACGCAAAGCAAGCAGGTTACTTCCCAAGGTGAAACTTGGCAGATT
GATAAATCTGCACAATCCACAATTAGCCCGAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAAG
GAAAATTCAAAATGGTATTACTCACTTAGTATTTTTTAATTATCCAATGAAAGCAAAATAA
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGCTAACTAA
AGTAGCCATGCAGTACACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAATTTGTAGCACTGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAGTGGCTTGAAGGTACGCAAAGCAAGCAGGTTACTTCCCAAGGTGAAACTTGGCAGATT
GATAAATCTGCACAATCCACAATTAGCCCGAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAAG
GAAAATTCAAAATGGTATTACTCACTTAGTATTTTTTAATTATCCAATGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
92.063 |
100 |
0.921 |