Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OTEC02_RS02030 Genome accession   NZ_CP020015
Coordinates   422595..423224 (-) Length   209 a.a.
NCBI ID   WP_081172703.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417595..428224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS01995 (OTEC02_01995) mlaE 417926..418702 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  OTEC02_RS02000 (OTEC02_02000) - 418702..419385 (+) 684 WP_081172701.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OTEC02_RS02005 (OTEC02_02005) - 419412..420053 (+) 642 WP_031949443.1 phospholipid-binding protein MlaC -
  OTEC02_RS02010 (OTEC02_02010) - 420065..420351 (+) 287 Protein_383 lipid asymmetry maintenance protein MlaB -
  OTEC02_RS02015 (OTEC02_02015) - 420424..421437 (-) 1014 WP_031949440.1 magnesium and cobalt transport protein CorA -
  OTEC02_RS02020 (OTEC02_02020) - 421596..422177 (+) 582 WP_016143577.1 TIGR00730 family Rossman fold protein -
  OTEC02_RS02025 (OTEC02_02025) - 422192..422593 (+) 402 WP_081172702.1 NUDIX hydrolase -
  OTEC02_RS02030 (OTEC02_02030) comF 422595..423224 (-) 630 WP_081172703.1 ComF family protein Machinery gene
  OTEC02_RS02035 (OTEC02_02035) recG 423217..425262 (-) 2046 WP_062850174.1 ATP-dependent DNA helicase RecG -
  OTEC02_RS02040 (OTEC02_02040) - 425283..426098 (+) 816 WP_081172704.1 NAD(P)-dependent oxidoreductase -
  OTEC02_RS02045 (OTEC02_02045) - 426178..427161 (+) 984 WP_081175790.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24467.64 Da        Isoelectric Point: 9.8962

>NTDB_id=220084 OTEC02_RS02030 WP_081172703.1 422595..423224(-) (comF) [Acinetobacter lactucae strain OTEC-02]
MFNFLNFQHLIQLFSPCSLCELGTREKYSLCKDCWEQLPWLKQTIQRNNLSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPY
HHEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=220084 OTEC02_RS02030 WP_081172703.1 422595..423224(-) (comF) [Acinetobacter lactucae strain OTEC-02]
ATGTTTAATTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCTATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGGGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAGTCATTATTACTTGCCAATATCTTAAGCAAACACTTAAAAATACCTGTTTGGCAACCGATTC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTTCTCGACTAGAGCGCTTTGAAAATATCGAACAACAATTTTTACCCTAT
CATCATGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTAATAACTACGGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCTTGTCTAGCAGCAACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.211

100

0.842
  comF Acinetobacter baumannii D1279779

83.254

100

0.833

Multiple sequence alignment