Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   BV140_RS05670 Genome accession   NZ_CP020013
Coordinates   1114263..1114979 (+) Length   238 a.a.
NCBI ID   WP_005655922.1    Uniprot ID   A0A0H3PFM8
Organism   Haemophilus influenzae strain 6P32H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1109263..1119979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV140_RS05650 (BV140_1147) - 1110202..1110732 (-) 531 WP_005659175.1 DsbE family thiol:disulfide interchange protein -
  BV140_RS05655 (BV140_1148) nrfE 1110732..1112639 (-) 1908 WP_005659178.1 heme lyase NrfEFG subunit NrfE -
  BV140_RS05660 (BV140_1149) suhB 1112748..1113551 (-) 804 WP_005659182.1 inositol-1-monophosphatase -
  BV140_RS05665 (BV140_1150) comN 1113751..1114263 (+) 513 WP_005651545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BV140_RS05670 (BV140_1151) comO 1114263..1114979 (+) 717 WP_005655922.1 type II secretion system protein J Machinery gene
  BV140_RS05675 (BV140_1152) comP 1114994..1115677 (+) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  BV140_RS05680 (BV140_1153) comQ 1115670..1115957 (+) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  BV140_RS05685 (BV140_1154) recC 1116003..1119368 (+) 3366 WP_005686198.1 exodeoxyribonuclease V subunit gamma -
  BV140_RS05690 (BV140_1155) nrdR 1119423..1119872 (+) 450 WP_005651549.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26734.11 Da        Isoelectric Point: 9.5507

>NTDB_id=220026 BV140_RS05670 WP_005655922.1 1114263..1114979(+) (comO) [Haemophilus influenzae strain 6P32H1]
MMKVLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=220026 BV140_RS05670 WP_005655922.1 1114263..1114979(+) (comO) [Haemophilus influenzae strain 6P32H1]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTAGCATTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACAGATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATTACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PFM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.739

100

0.987

Multiple sequence alignment