Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   BV134_RS05145 Genome accession   NZ_CP020011
Coordinates   1019670..1020182 (+) Length   170 a.a.
NCBI ID   WP_050822924.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 67P56H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1014670..1025182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV134_RS05125 (BV134_1038) nrfF 1014969..1016123 (-) 1155 WP_005686194.1 heme lyase NrfEFG subunit NrfF -
  BV134_RS05130 (BV134_1039) - 1016120..1016650 (-) 531 WP_014551007.1 DsbE family thiol:disulfide interchange protein -
  BV134_RS05135 (BV134_1040) nrfE 1016650..1018557 (-) 1908 WP_014551006.1 heme lyase NrfEFG subunit NrfE -
  BV134_RS05140 (BV134_1041) suhB 1018667..1019470 (-) 804 WP_014551005.1 inositol-1-monophosphatase -
  BV134_RS05145 (BV134_1042) comN 1019670..1020182 (+) 513 WP_050822924.1 type II secretion system protein Machinery gene
  BV134_RS05150 (BV134_1043) comO 1020182..1020898 (+) 717 WP_014551003.1 type II secretion system protein J Machinery gene
  BV134_RS05155 (BV134_1044) comP 1020913..1021596 (+) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  BV134_RS05160 (BV134_1045) comQ 1021589..1021876 (+) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19854.14 Da        Isoelectric Point: 8.7271

>NTDB_id=219951 BV134_RS05145 WP_050822924.1 1019670..1020182(+) (comN) [Haemophilus influenzae strain 67P56H1]
MQKGMTLVELLIGLAIISIVLSFVVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYVHFYYPYFPNKTIIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQLDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=219951 BV134_RS05145 WP_050822924.1 1019670..1020182(+) (comN) [Haemophilus influenzae strain 67P56H1]
ATGCAAAAAGGTATGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTCACCTAAAACGATTTTAGCTAAAGAGCAACATCGCCTGTATTTATTTCTACGTCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGTGCATTTTTACTATCCTTA
TTTTCCTAATAAAACGATAATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTA
AAAACCAATCAATTGGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

95.294

100

0.953

Multiple sequence alignment