Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | BV134_RS02200 | Genome accession | NZ_CP020011 |
| Coordinates | 449053..449466 (+) | Length | 137 a.a. |
| NCBI ID | WP_005686898.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 67P56H1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 444053..454466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV134_RS02180 (BV134_443) | - | 444541..447135 (-) | 2595 | WP_050822811.1 | penicillin-binding protein 1A | - |
| BV134_RS02185 (BV134_444) | comA | 447234..448031 (+) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| BV134_RS02190 (BV134_445) | comB | 448032..448538 (+) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| BV134_RS02195 (BV134_446) | comC | 448535..449056 (+) | 522 | WP_005686899.1 | competence protein ComC | Machinery gene |
| BV134_RS02200 (BV134_447) | comD | 449053..449466 (+) | 414 | WP_005686898.1 | pilus assembly protein PilP | Machinery gene |
| BV134_RS02205 (BV134_448) | comE | 449476..450813 (+) | 1338 | WP_005686897.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| BV134_RS02210 (BV134_449) | - | 450826..451512 (+) | 687 | WP_050822809.1 | ComF family protein | - |
| BV134_RS02215 (BV134_450) | nfuA | 451588..452184 (+) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| BV134_RS02220 (BV134_451) | nudC | 452251..453045 (+) | 795 | WP_014550416.1 | NAD(+) diphosphatase | - |
| BV134_RS02225 (BV134_452) | - | 453081..453671 (+) | 591 | WP_005656455.1 | YjaG family protein | - |
| BV134_RS02230 (BV134_453) | - | 453811..454083 (+) | 273 | WP_014550417.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15677.82 Da Isoelectric Point: 4.5625
>NTDB_id=219934 BV134_RS02200 WP_005686898.1 449053..449466(+) (comD) [Haemophilus influenzae strain 67P56H1]
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=219934 BV134_RS02200 WP_005686898.1 449053..449466(+) (comD) [Haemophilus influenzae strain 67P56H1]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |