Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   BV121_RS05325 Genome accession   NZ_CP020008
Coordinates   1050646..1051362 (+) Length   238 a.a.
NCBI ID   WP_042593718.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 5P28H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1045646..1056362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV121_RS05305 (BV121_1076) - 1046585..1047115 (-) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -
  BV121_RS05310 (BV121_1077) nrfE 1047115..1049022 (-) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  BV121_RS05315 (BV121_1078) suhB 1049131..1049934 (-) 804 WP_005664157.1 inositol-1-monophosphatase -
  BV121_RS05320 (BV121_1079) comN 1050134..1050646 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BV121_RS05325 (BV121_1080) comO 1050646..1051362 (+) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  BV121_RS05330 (BV121_1081) comP 1051377..1052060 (+) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  BV121_RS05335 (BV121_1082) comQ 1052053..1052340 (+) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene
  BV121_RS05340 (BV121_1083) recC 1052386..1055751 (+) 3366 WP_105182640.1 exodeoxyribonuclease V subunit gamma -
  BV121_RS05345 (BV121_1084) nrdR 1055806..1056255 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26759.16 Da        Isoelectric Point: 9.6935

>NTDB_id=219846 BV121_RS05325 WP_042593718.1 1050646..1051362(+) (comO) [Haemophilus influenzae strain 5P28H1]
MMKVLLKGKTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=219846 BV121_RS05325 WP_042593718.1 1050646..1051362(+) (comO) [Haemophilus influenzae strain 5P28H1]
ATGATGAAAGTATTATTAAAAGGGAAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment