Detailed information NTG0219848

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: CV83906_RS09915
• Genome accession: NZ_CP025753
• Coordinates: 1739173..1740198 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain CV839-06
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1734173..1745198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV83906_RS09905 (CV83906_1713)	rpmE	1736404..1736616 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
CV83906_RS09910 (CV83906_1714)	priA	1736819..1739017 (+)	2199	WP_001324365.1	primosomal protein N'	Machinery gene
CV83906_RS09915 (CV83906_1715)	cytR	1739173..1740198 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
CV83906_RS09920 (CV83906_1717)	ftsN	1740290..1741249 (+)	960	WP_000068837.1	cell division protein FtsN	-
CV83906_RS09925 (CV83906_1718)	hslV	1741342..1741872 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
CV83906_RS09930 (CV83906_1719)	hslU	1741882..1743213 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
CV83906_RS09935 (CV83906_1720)	menA	1743280..1744206 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
CV83906_RS09940 (CV83906_1721)	rraA	1744299..1744784 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
CV83906_RS09945 (CV83906_1722)	zapB	1744869..1745114 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=219848 CV83906_RS09915 WP_000644904.1 1739173..1740198(+) (cytR) [Escherichia coli strain CV839-06]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=219848 CV83906_RS09915 WP_000644904.1 1739173..1740198(+) (cytR) [Escherichia coli strain CV839-06]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628