Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | BV121_RS02600 | Genome accession | NZ_CP020008 |
| Coordinates | 508770..509183 (-) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain 5P28H1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 503770..514183
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV121_RS02570 (BV121_522) | - | 504153..504425 (-) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
| BV121_RS02575 (BV121_523) | - | 504565..505155 (-) | 591 | WP_005686892.1 | YjaG family protein | - |
| BV121_RS02580 (BV121_524) | nudC | 505191..505985 (-) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| BV121_RS02585 (BV121_525) | nfuA | 506052..506648 (-) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| BV121_RS02590 (BV121_526) | - | 506724..507410 (-) | 687 | WP_011272045.1 | ComF family protein | - |
| BV121_RS02595 (BV121_527) | comE | 507423..508760 (-) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| BV121_RS02600 (BV121_528) | comD | 508770..509183 (-) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| BV121_RS02605 (BV121_529) | comC | 509180..509701 (-) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| BV121_RS02610 (BV121_530) | comB | 509698..510204 (-) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| BV121_RS02615 (BV121_531) | comA | 510205..511002 (-) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| BV121_RS02620 (BV121_532) | - | 511101..513695 (+) | 2595 | WP_042593320.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=219833 BV121_RS02600 WP_011272047.1 508770..509183(-) (comD) [Haemophilus influenzae strain 5P28H1]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=219833 BV121_RS02600 WP_011272047.1 508770..509183(-) (comD) [Haemophilus influenzae strain 5P28H1]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |