Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C1I23_RS19775 Genome accession   NZ_CP025747
Coordinates   3722673..3723410 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ML35     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3717673..3728410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1I23_RS19760 (C1I23_19810) clpC 3718127..3720700 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C1I23_RS19765 (C1I23_19815) yfiH 3720830..3721561 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  C1I23_RS19770 (C1I23_19820) rluD 3721558..3722538 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C1I23_RS19775 (C1I23_19825) comL 3722673..3723410 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C1I23_RS19785 (C1I23_19835) raiA 3723681..3724022 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C1I23_RS19790 (C1I23_19840) pheL 3724126..3724173 (+) 48 WP_010723158.1 phe operon leader peptide -
  C1I23_RS19795 (C1I23_19845) pheA 3724272..3725432 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  C1I23_RS19800 (C1I23_19850) tyrA 3725475..3726596 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C1I23_RS19805 (C1I23_19855) aroF 3726607..3727677 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C1I23_RS19810 (C1I23_19860) yfiL 3727887..3728252 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=219802 C1I23_RS19775 WP_000197686.1 3722673..3723410(+) (comL) [Escherichia coli strain ML35]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=219802 C1I23_RS19775 WP_000197686.1 3722673..3723410(+) (comL) [Escherichia coli strain ML35]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376