Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BUM88_RS17455 Genome accession   NZ_CP020000
Coordinates   3618931..3619560 (+) Length   209 a.a.
NCBI ID   WP_080028355.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3613931..3624560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS17440 (BUM88_17440) - 3614991..3615977 (-) 987 WP_080028354.1 putative solute-binding protein -
  BUM88_RS17445 (BUM88_17445) - 3616057..3616872 (-) 816 WP_080027835.1 NAD-dependent epimerase/dehydratase family protein -
  BUM88_RS17450 (BUM88_17450) recG 3616893..3618938 (+) 2046 WP_080027836.1 ATP-dependent DNA helicase RecG -
  BUM88_RS17455 (BUM88_17455) comF 3618931..3619560 (+) 630 WP_080028355.1 ComF family protein Machinery gene
  BUM88_RS17460 (BUM88_17460) - 3619566..3619964 (-) 399 WP_005038468.1 NUDIX hydrolase -
  BUM88_RS17465 (BUM88_17465) - 3619978..3620559 (-) 582 WP_080027837.1 TIGR00730 family Rossman fold protein -
  BUM88_RS17470 (BUM88_17470) - 3620718..3621731 (+) 1014 WP_004639553.1 magnesium and cobalt transport protein CorA -
  BUM88_RS17475 (BUM88_17475) - 3621804..3622091 (-) 288 WP_080027838.1 STAS domain-containing protein -
  BUM88_RS17480 (BUM88_17480) - 3622103..3622744 (-) 642 WP_005038459.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  BUM88_RS17485 (BUM88_17485) - 3622771..3623454 (-) 684 WP_005038457.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BUM88_RS17490 (BUM88_17490) mlaE 3623454..3624233 (-) 780 WP_005038455.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24218.36 Da        Isoelectric Point: 9.2511

>NTDB_id=219736 BUM88_RS17455 WP_080028355.1 3618931..3619560(+) (comF) [Acinetobacter calcoaceticus strain CA16]
MFSFLNPQHLIPSLSPCLLCESGVREKHSLCKDCWEQLPWLKQIIQRNDQSVLVACDYAYPINRIIQQFKYEQKLHYQIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAF
TQEKRRYRRVLIIDDVVTTGSSIYALSQVLKQLGCTTIHATCLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=219736 BUM88_RS17455 WP_080028355.1 3618931..3619560(+) (comF) [Acinetobacter calcoaceticus strain CA16]
ATGTTTAGTTTCTTAAATCCGCAGCATCTTATCCCCTCACTCTCACCTTGCTTGTTGTGTGAGTCAGGTGTGCGAGAAAA
ACATTCGCTCTGTAAGGACTGTTGGGAACAGTTACCTTGGCTTAAACAAATAATTCAACGTAATGATCAATCCGTTCTTG
TGGCCTGTGATTATGCATATCCAATCAATCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGTGAAATTTTACAACAACTCAAATTTCCCAAGGTACAAGCTATTGTACCTATGCCGATTTCGAATCAACGCTTAAT
TGAACGTGGTTTCAATCAGTCACTGTTACTCGCAAATATCTTAAGCAAGCAATTAAAAATACCTGTGTGGCAGCCAGTGC
AACGCCTTGCTGAGCATTCACAAAAAGGGCTTTCTCGGTTGGAACGCTTTGAGAACATCGAACAACAATTCATTGCATTT
ACTCAAGAGAAACGGCGTTATCGCCGTGTTCTGATTATTGATGATGTCGTTACCACCGGAAGTTCAATTTACGCCCTTAG
TCAGGTATTAAAGCAATTAGGTTGTACAACAATTCATGCCACCTGTTTAGCGGCAACTTTAACGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

86.124

100

0.861
  comF Acinetobacter baumannii D1279779

85.167

100

0.852

Multiple sequence alignment