Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   YDC107_RS06035 Genome accession   NZ_CP025707
Coordinates   1230581..1231318 (+) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain YDC107     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1225581..1236318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YDC107_RS06020 (YDC107_1173) clpC 1226035..1228608 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  YDC107_RS06025 (YDC107_1174) yfiH 1228738..1229469 (-) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  YDC107_RS06030 (YDC107_1175) rluD 1229466..1230446 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  YDC107_RS06035 (YDC107_1176) comL 1230581..1231318 (+) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  YDC107_RS06040 (YDC107_1177) raiA 1231589..1231930 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  YDC107_RS06045 pheL 1232034..1232081 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  YDC107_RS06050 (YDC107_1178) pheA 1232180..1233340 (+) 1161 WP_020233815.1 bifunctional chorismate mutase/prephenate dehydratase -
  YDC107_RS06055 (YDC107_1179) tyrA 1233383..1234504 (-) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  YDC107_RS06060 (YDC107_1180) aroF 1234515..1235585 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  YDC107_RS06065 (YDC107_1181) yfiL 1235795..1236160 (+) 366 WP_001314943.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=219679 YDC107_RS06035 WP_000197689.1 1230581..1231318(+) (comL) [Escherichia coli strain YDC107]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=219679 YDC107_RS06035 WP_000197689.1 1230581..1231318(+) (comL) [Escherichia coli strain YDC107]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376